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berkeley_reactor_200306_planktonic_scaffold_78559

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Displaying items 151-180 of 316 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_78559_149
Lyngbya confervoides, Lyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

182912..183283
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Synechococcus sp. (strain ATCC 27167 / PCC 6312) RepID=K9RY56_SYNP3
Uncharacterized protein {ECO:0000313|EMBL:KIF38538.1}; TaxID=1574623 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Lyngbya.;" source="Lyngbya confervoides BDU141951.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_78559_150
S_Thermoanaerobacterales_50_218, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(183385..184266)
DNA (882bp) protein (294aa)
Putative uncharacterized protein n=1 Tax=Moraxella catarrhalis BC7 RepID=F1WZJ6_MORCA
hypothetical protein
Tax=S_Thermoanaerobacterales_50_218
berkeley_reactor_200306_planktonic_scaffold_78559_151
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

184346..184831
DNA (486bp) protein (162aa)
putative D-beta-D-heptose 1-phosphate adenylyltransferase (EC:2.7.7.-)
Cytidyltransferase-related domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIN8_9BACT
Cytidyltransferase-related domain protein {ECO:0000313|EMBL:EEF60301.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_78559_152
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

184841..185947
DNA (1107bp) protein (369aa)
Glycosyl transferase group 1 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIP0_9BACT
Glycosyl transferase group 1 {ECO:0000313|EMBL:EEF60303.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
glycosyl transferase
berkeley_reactor_200306_planktonic_scaffold_78559_153
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(185939..186661)
DNA (723bp) protein (241aa)
Transaldolase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZZR9_OPITP
translaldolase
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
berkeley_reactor_200306_planktonic_scaffold_78559_154
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(186667..187242)
DNA (576bp) protein (192aa)
D,D-heptose 1,7-bisphosphate phosphatase {ECO:0000256|PIRNR:PIRNR004682}; EC=3.1.3.- {ECO:0000256|PIRNR:PIRNR004682};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
D,D-heptose 1,7-bisphosphate phosphatase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0V1_9BACT
histidinol-phosphate phosphatase
berkeley_reactor_200306_planktonic_scaffold_78559_155
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(187289..187885)
DNA (597bp) protein (199aa)
Sugar isomerase family protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0V0_9BACT
Sugar isomerase family protein {ECO:0000313|EMBL:EDY19962.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
sugar isomerase
berkeley_reactor_200306_planktonic_scaffold_78559_156
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(188022..188735)
DNA (714bp) protein (238aa)
Nucleotidyl transferase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0U9_9BACT
Nucleotidyl transferase {ECO:0000313|EMBL:EDY19961.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
nucleotidyl transferase
berkeley_reactor_200306_planktonic_scaffold_78559_157
Candidatus Desulforudis audaxviator, Candidatus Desulforudis, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(188813..189700)
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Desulforudis audaxviator (strain MP104C) RepID=B1I2F4_DESAP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACA59237.1}; TaxID=477974 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Candidatus Desulforudis.;" source="Desulforudis audaxviator (strain MP104C).;"
berkeley_reactor_200306_planktonic_scaffold_78559_158

Not on your lists

comp(189736..190716)
DNA (981bp) protein (327aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2BDC3_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48844.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
GHMP kinase
berkeley_reactor_200306_planktonic_scaffold_78559_159
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(190720..191157)
DNA (438bp) protein (146aa)
Putative uncharacterized protein id=3016696 bin=GWF2_Lentisphaerae_38_69 species=ACD18 genus=ACD18 taxon_order=ACD18 taxon_class=ACD18 phylum=OD1 tax=GWF2_Lentisphaerae_38_69 organism_group=Lentisphaerae organism_desc=a349
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
berkeley_reactor_200306_planktonic_scaffold_78559_160

Not on your lists

comp(191199..192203)
DNA (1005bp) protein (335aa)
Oxidoreductase domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0U4_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48845.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
oxidoreductase domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_78559_161
GWA2_Elusimicrobia_51_34_curated, Elusimicrobia, Bacteria

Not on your lists

comp(192205..193065)
DNA (861bp) protein (287aa)
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) id=2734466 bin=GWC2_Elusimicrobia_51_8 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Elusimicrobia_51_8 organism_group=Elusimicrobia
short-chain alcohol dehydrogenase
Tax=GWA2_Elusimicrobia_51_34_curated
berkeley_reactor_200306_planktonic_scaffold_78559_162

Not on your lists

comp(193062..194333)
DNA (1272bp) protein (424aa)
ugd; UDP-glucose 6-dehydrogenase (EC:1.1.1.22)
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48847.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
UDP-glucose 6-dehydrogenase id=2211022 bin=GWB2_Proteobacteria_55_19 species=SAR324 cluster bacterium SCGC AAA001-C10 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
berkeley_reactor_200306_planktonic_scaffold_78559_163
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(194330..195304)
DNA (975bp) protein (325aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZZR3_OPITP
NAD-dependent epimerase/dehydratase
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ACB77249.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_78559_164
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(195732..197114)
DNA (1383bp) protein (461aa)
Hopanoid biosynthesis associated radical SAM protein HpnH n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKG5_9BACT
Hopanoid biosynthesis associated radical SAM protein HpnH {ECO:0000313|EMBL:EEF59635.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hopanoid biosynthesis associated radical SAM protein HpnH
berkeley_reactor_200306_planktonic_scaffold_78559_165
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

197383..198165
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKG6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59636.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_78559_166
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


198246..198830
DNA (585bp) protein (195aa)
Methyltransferase type 11 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XEM9_9BACT
Methyltransferase type 11 {ECO:0000313|EMBL:EEF61743.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
phospholipid N-methyltransferase
berkeley_reactor_200306_planktonic_scaffold_78559_167
unknown

Not on your lists

comp(199199..200545)
DNA (1347bp) protein (449aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_78559_168
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(200567..201337)
DNA (771bp) protein (257aa)
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Enoyl-[acyl-carrier-protein] reductase [NADH] n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQS0_9BACT
short-chain dehydrogenase/reductase SDR
berkeley_reactor_200306_planktonic_scaffold_78559_169
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

201432..202076
DNA (645bp) protein (215aa)
Peptidase M50 n=2 Tax=unclassified Opitutaceae RepID=H1IXJ7_9BACT
peptidase M50
Zn-dependent protease {ECO:0000313|EMBL:EIP97258.1}; Flags: Precursor;; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
berkeley_reactor_200306_planktonic_scaffold_78559_170
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(202092..202559)
DNA (468bp) protein (156aa)
Putative tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XDA2_9BACT
TrmH family RNA methyltransferase
berkeley_reactor_200306_planktonic_scaffold_78559_171
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(202623..203378)
DNA (756bp) protein (252aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
truA; tRNA pseudouridine synthase A (EC:5.4.99.12)
tRNA pseudouridine synthase A n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XDA1_9BACT
berkeley_reactor_200306_planktonic_scaffold_78559_172
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(203437..205524)
DNA (2088bp) protein (696aa)
DNA topoisomerase (ATP-hydrolyzing) {ECO:0000313|EMBL:EEF61751.1}; EC=5.99.1.3 {ECO:0000313|EMBL:EEF61751.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
DNA topoisomerase (EC:5.99.1.3)
DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XEN7_9BACT
berkeley_reactor_200306_planktonic_scaffold_78559_173
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

205834..206862
DNA (1029bp) protein (343aa)
Cell shape determining protein, MreB/Mrl family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XG13_9BACT
Cell shape determining protein, MreB/Mrl family {ECO:0000313|EMBL:EEF61175.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
mreB; rod shape-determining protein MreB
berkeley_reactor_200306_planktonic_scaffold_78559_174
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

206923..207726
DNA (804bp) protein (268aa)
Cell shape-determining protein MreC n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XG14_9BACT
Cell shape-determining protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Cell shape protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
rod shape-determining protein MreC
berkeley_reactor_200306_planktonic_scaffold_78559_175
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

207734..208300
DNA (567bp) protein (189aa)
Rod shape-determining protein MreD n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XG15_9BACT
Rod shape-determining protein MreD {ECO:0000313|EMBL:EEF61177.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_78559_176
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

208409..210391
DNA (1983bp) protein (661aa)
Penicillin-binding protein 2 {ECO:0000313|EMBL:EEF61178.1}; EC=2.4.1.129 {ECO:0000313|EMBL:EEF61178.1};; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Penicillin-binding protein 2 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XG16_9BACT
ftsI; Cell division protein FtsI
berkeley_reactor_200306_planktonic_scaffold_78559_177
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

210393..211604
DNA (1212bp) protein (404aa)
Rod shape-determining protein RodA n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XG17_9BACT
Rod shape-determining protein RodA {ECO:0000313|EMBL:EEF61179.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
cell cycle protein
berkeley_reactor_200306_planktonic_scaffold_78559_178
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

211608..213566
DNA (1959bp) protein (653aa)
Ribonuclease, Rne/Rng family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XG18_9BACT
Ribonuclease, Rne/Rng family {ECO:0000313|EMBL:EEF61180.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ribonuclease
Displaying items 151-180 of 316 in total

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