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berkeley_reactor_200306_planktonic_scaffold_78559

Search features with annotation key words

Displaying items 181-210 of 316 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_78559_179
Amycolatopsis vancoresmycina, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(213859..216048)
DNA (2190bp) protein (730aa)
Beta-glucosidase n=1 Tax=Amycolatopsis vancoresmycina DSM 44592 RepID=R1HY26_9PSEU
Beta-glucosidase {ECO:0000313|EMBL:EOD63174.1}; TaxID=1292037 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis vancoresmycina DSM 44592.;"
bglX; beta-glucosidase
berkeley_reactor_200306_planktonic_scaffold_78559_180
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(216411..217739)
DNA (1329bp) protein (443aa)
HI0933 family protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZSU3_OPITP
hypothetical protein
HI0933 family protein {ECO:0000313|EMBL:ACB74787.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_78559_181
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

217895..218815
DNA (921bp) protein (307aa)
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3A6_9BACT
S-adenosyl-methyltransferase MraW
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
berkeley_reactor_200306_planktonic_scaffold_78559_182
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

Not on your lists

218999..220168
DNA (1170bp) protein (390aa)
Adenylate kinase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZX32_OPITP
adenylate kinase
Tax=BJP_IG2103_Bacteroidetes_41_9
berkeley_reactor_200306_planktonic_scaffold_78559_183
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(220320..221075)
DNA (756bp) protein (252aa)
FeS assembly ATPase SufC n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XEL5_9BACT
FeS assembly ATPase SufC {ECO:0000313|EMBL:EEF61729.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
sufC; Fe-S cluster assembly ATP-binding protein SufC
berkeley_reactor_200306_planktonic_scaffold_78559_184
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(221169..222617)
DNA (1449bp) protein (483aa)
cysteine desulfurase activator complex subunit SufB n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI0003711654
cysteine desulfurase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
berkeley_reactor_200306_planktonic_scaffold_78559_185
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(222660..223094)
DNA (435bp) protein (145aa)
Ferric uptake regulator, Fur family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XEL8_9BACT
Ferric uptake regulator, Fur family {ECO:0000313|EMBL:EEF61732.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Fur family ferric uptake regulator
berkeley_reactor_200306_planktonic_scaffold_78559_186
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

223388..225652
DNA (2265bp) protein (755aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Histidine kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XEM2_9BACT
sensor protein
berkeley_reactor_200306_planktonic_scaffold_78559_187
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

225696..226373
DNA (678bp) protein (226aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XEM3_9BACT
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:EEF61737.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
two component transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_78559_188
unknown

Not on your lists

226370..226519
DNA (150bp) protein (50aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_78559_189
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

226556..229108
DNA (2553bp) protein (851aa)
FOG: Ankyrin repeat-like protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XEM5_9BACT
FOG: Ankyrin repeat-like protein {ECO:0000313|EMBL:EEF61739.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ankyrin
berkeley_reactor_200306_planktonic_scaffold_78559_190
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(229270..229872)
DNA (603bp) protein (201aa)
Conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family-like protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DB69_9BACT
Conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family-like protein {ECO:0000313|EMBL:EDY16347.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
flavin reductase
berkeley_reactor_200306_planktonic_scaffold_78559_191
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(229891..231342)
DNA (1452bp) protein (484aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00276898};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Sun protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XT31_9BACT
sun protein
berkeley_reactor_200306_planktonic_scaffold_78559_192
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

231391..233271
DNA (1881bp) protein (627aa)
GreA/GreB family elongation factor n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XT30_9BACT
GreA/GreB family elongation factor {ECO:0000313|EMBL:EEF57004.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
greA; transcription elongation factor GreA fused to uncharacterized associated domain
berkeley_reactor_200306_planktonic_scaffold_78559_193
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(233356..233799)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XT29_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57003.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_78559_194
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

233852..234592
DNA (741bp) protein (247aa)
Phosphatidylserine decarboxylase proenzyme {ECO:0000256|SAAS:SAAS00154492}; EC=4.1.1.65 {ECO:0000256|SAAS:SAAS00093350};; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Phosphatidylserine decarboxylase related protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRG1_9BACT
phosphatidylserine decarboxylase
berkeley_reactor_200306_planktonic_scaffold_78559_195
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

234598..235470
DNA (873bp) protein (291aa)
CDP-diacylglycerol/serine O-phosphatidyltransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRG0_9BACT
CDP-diacylglycerol/serine O-phosphatidyltransferase {ECO:0000313|EMBL:EEF57594.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
pssA; phosphatidylserine synthase
berkeley_reactor_200306_planktonic_scaffold_78559_196
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

235472..236230
DNA (759bp) protein (253aa)
Lysine exporter protein (LYSE/YGGA) n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRF9_9BACT
Lysine exporter protein (LYSE/YGGA) {ECO:0000313|EMBL:EEF57593.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
lysine exporter LysE/YggA
berkeley_reactor_200306_planktonic_scaffold_78559_197
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

236234..237337
DNA (1104bp) protein (368aa)
Ribosome-binding ATPase YchF n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSM4_9BACT
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
GTP-binding protein YchF
berkeley_reactor_200306_planktonic_scaffold_78559_198
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

237436..238455
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZNS4_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB75444.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_78559_199
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

238657..239676
DNA (1020bp) protein (340aa)
D-alanine--D-alanine ligase domain protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZNS5_OPITP
D-alanine--D-alanine ligase
D-alanine--D-alanine ligase domain protein {ECO:0000313|EMBL:ACB75445.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_78559_200
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(239763..241022)
DNA (1260bp) protein (420aa)
Cysteine desulfurase {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Cysteine desulfurase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XEV3_9BACT
SufS subfamily cysteine desulfurase
berkeley_reactor_200306_planktonic_scaffold_78559_201
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(241082..241630)
DNA (549bp) protein (183aa)
FeS assembly SUF system protein SufT n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XEV4_9BACT
FeS assembly SUF system protein SufT {ECO:0000313|EMBL:EEF61818.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
FeS assembly SUF system protein SufT
berkeley_reactor_200306_planktonic_scaffold_78559_202
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(241670..242125)
DNA (456bp) protein (152aa)
SUF system FeS assembly protein, NifU family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XEV5_9BACT
SUF system FeS assembly protein, NifU family {ECO:0000313|EMBL:EEF61819.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
nifU; NifU-like protein
berkeley_reactor_200306_planktonic_scaffold_78559_203
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(242214..243554)
DNA (1341bp) protein (447aa)
FeS assembly protein SufD n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XEV6_9BACT
FeS assembly protein SufD {ECO:0000313|EMBL:EEF61820.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
iron ABC transporter permease
berkeley_reactor_200306_planktonic_scaffold_78559_204
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

243677..243907
DNA (231bp) protein (77aa)
Protein containing DUF433 n=1 Tax=Beggiatoa sp. PS RepID=A7BR96_9GAMM
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
berkeley_reactor_200306_planktonic_scaffold_78559_205
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

243904..244233
DNA (330bp) protein (110aa)
Putative uncharacterized protein n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CNK3_SIDLE
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
berkeley_reactor_200306_planktonic_scaffold_78559_206
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

244237..245277
DNA (1041bp) protein (347aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XEN5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61749.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_78559_207
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


comp(245281..246162)
DNA (882bp) protein (294aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLJ9_9BACT
dimethyladenosine transferase
berkeley_reactor_200306_planktonic_scaffold_78559_208
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(246320..247327)
DNA (1008bp) protein (336aa)
PfkB domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGJ7_9BACT
PfkB domain protein {ECO:0000313|EMBL:EEF61048.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ribokinase-like domain-containing protein
Displaying items 181-210 of 316 in total

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