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berkeley_reactor_200306_planktonic_scaffold_78559_207

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(245281..246162)

Top 3 Functional Annotations

Value Algorithm Source
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 63.8
  • Coverage: 290.0
  • Bit_score: 348
  • Evalue 6.00e-93
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLJ9_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 63.8
  • Coverage: 290.0
  • Bit_score: 348
  • Evalue 4.30e-93
dimethyladenosine transferase similarity KEGG
DB: KEGG
  • Identity: 36.6
  • Coverage: 292.0
  • Bit_score: 173
  • Evalue 6.90e-41

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 882
ATGAAACTTTCCGACATGCGCGATTTGCTGGCCCGGCGCGACATCCAGCTCACCAAATCGCTCGGGCAAAATTTTTTGCACGATGCGCATCAATTGGACCGCATCGTGGCGGCGGCGGAATTGTCCAAAACAGACAAGGTTTTGGAAATCGGCCCCGGCCTCGGTCCGCTCACCGAACGGTTGATTGAAAAAGCCGGCGAAGTGCTGGCCATTGAAAAAGACGCGCGGCTCGTCGAGGTTTTGGGGGAAAGATTCAACATAGGACAGGCGTCGCGCCTGTCTTCATCTTCTTCTGAAAAGTTAGAGACCGGCGCGGCGCCTGTCCTGCGGCTTGTTCACGACGACGCGCTGGACTTTCTCAAACGGGAGCCGCGCGACTGGCATGACTGGAAACTGGTCGCCAACCTGCCGTATTCCGTTGCCTCGCCGATTCTCGTGGAACTGGCCGCCGGCATTCGTGCGCCCGAACGGCTGGTGGCCACGCTCCAGCTTGAAGTGGCCCAACGGCTCATGGCGCGGACGGATGATGACGATTATGGCGTGCTGACCCTGCTGGTGCAGCTGGATTTCGAGCCGCGCGGCTGGTTCAAAATTCCATCAAGCTGCTTTTTCCCCGCGCCGGAGGTGGATTCCGCCTGCGTCTGCCTGGTGCGGCGTTCCACCCCTTTGCTTGCCGAAGACAGCCGCAAAATCTTTTACCGGCTCGTCAAGCAATCCTTCTCCCAACGGCGCAAGATGATGTTGAAACTGTTGAAACAGGACTGGCCCCGGGAAAAGCTCGAAGCGGCGTTTGCCGGACTAAACATCTCGCTTCAAGAACGCGCGGAAAAACTGAGCTTGGAACAGTTTGTGGCGCTGACGCAAACGCTGTGCGCTGCTTGA
PROTEIN sequence
Length: 294
MKLSDMRDLLARRDIQLTKSLGQNFLHDAHQLDRIVAAAELSKTDKVLEIGPGLGPLTERLIEKAGEVLAIEKDARLVEVLGERFNIGQASRLSSSSSEKLETGAAPVLRLVHDDALDFLKREPRDWHDWKLVANLPYSVASPILVELAAGIRAPERLVATLQLEVAQRLMARTDDDDYGVLTLLVQLDFEPRGWFKIPSSCFFPAPEVDSACVCLVRRSTPLLAEDSRKIFYRLVKQSFSQRRKMMLKLLKQDWPREKLEAAFAGLNISLQERAEKLSLEQFVALTQTLCAA*