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berkeley_reactor_200306_planktonic_scaffold_78559_171

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(202623..203378)

Top 3 Functional Annotations

Value Algorithm Source
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 65.7
  • Coverage: 251.0
  • Bit_score: 347
  • Evalue 1.50e-92
truA; tRNA pseudouridine synthase A (EC:5.4.99.12) similarity KEGG
DB: KEGG
  • Identity: 42.3
  • Coverage: 246.0
  • Bit_score: 199
  • Evalue 7.80e-49
tRNA pseudouridine synthase A n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XDA1_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 65.7
  • Coverage: 251.0
  • Bit_score: 347
  • Evalue 1.10e-92

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 756
GTGGAAACGCTGAAATTCAAACTTGTCATCGCCTACGACGGCGCGGCCTACCAGGGCTGGCAGGTGCAGAAGATTGGCACCGGCGTGCAGGAGAAAGTCGAGGCCGTGCTGGCGCGCTATTTTCCCAGCGCGCCGCGATTGCACAGCAGCAGTCGCACGGACACCGGCGTTCATGCGCTCGGCATGGTGGCGCATTTCGAGATTCCCAAAACCGAATTCAAGATTCCACTGGCGCGGCTGGCCATCGCGCTGAATGCGTTTTTGCCGGACGATGTTCGGGTTTTGCACGCCACCCGAGCGCCCAAAAAATTTCACGCGCGCTTCGACGCCACCGGCAAGCAGTATCGTTATTTCATCTGGAATCATCACGCGATGAATCCGTTGCTGGTCGGCCGCGCCTGGCATGTGCCGCGCCAACTGGACTACGCCAAAATGCGCCGCATCGCGAAACTGTTCGTCGGCAAGCACGATTTCAAATCGTTCGCCGCGAATCATCCTTACGAAATGGAAAGCACCGTGCGCACATTGACGCGCTGCGAGGTGAAAAAATCCGGCATGAATTACACCGTCATCATCGAAGGCGACGGTTTTCTTTACAAGATGTGTCGCGGTATCGTGGGCACGCTGGTGCAAGCCGGTTACGGCCGGTTTTCCGTGGACGACGTGCAGGCGATGTTCGCCCAGACCAATCGCAGCGCCGCCGGCATGAGCGCGCCGGCGCACGGCTTGGTGTTGTGGAAGGTGTTTTATAAGTAA
PROTEIN sequence
Length: 252
VETLKFKLVIAYDGAAYQGWQVQKIGTGVQEKVEAVLARYFPSAPRLHSSSRTDTGVHALGMVAHFEIPKTEFKIPLARLAIALNAFLPDDVRVLHATRAPKKFHARFDATGKQYRYFIWNHHAMNPLLVGRAWHVPRQLDYAKMRRIAKLFVGKHDFKSFAANHPYEMESTVRTLTRCEVKKSGMNYTVIIEGDGFLYKMCRGIVGTLVQAGYGRFSVDDVQAMFAQTNRSAAGMSAPAHGLVLWKVFYK*