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berkeley_reactor_200306_planktonic_scaffold_78559_16

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(17267..17896)

Top 3 Functional Annotations

Value Algorithm Source
50S ribosomal protein L4 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFN0_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 65.6
  • Coverage: 209.0
  • Bit_score: 279
  • Evalue 2.30e-72
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 65.6
  • Coverage: 209.0
  • Bit_score: 279
  • Evalue 3.20e-72
rplD; 50S ribosomal protein L4 similarity KEGG
DB: KEGG
  • Identity: 45.4
  • Coverage: 205.0
  • Bit_score: 184
  • Evalue 2.10e-44

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 630
ATGAAAATTTCCATCAAGAATACCGCCGGAAAAGATCAGGGTGAACTCGAAGTGAAGTTCGCGCTGATTGAAAACGGCAAAGGCACCCAGGCCGTCCACGACGCCGTGACCGCGTATCGCGCGGCGCAGCGCAGCGGCACCGCCTGCACCAAGAATGTCGGCGAAGTCTCCGGCAGCAACAAGAAACCCTGGCGCCAGAAAGGCACCGGCCGCGCCCGCGCCGGTTCGCATCAATCGCCGCTCTGGGTCGGTGGCGGTGTCGTGTTCGGCCCCAAGCCGCGCGATTTCCGCAAGAAGATCTCCAAGAAAACCCGCGCCCTGGCCTTGCGCAAAGCGTTGAGCGAACGCCTCAAGGCCGGTGACGTGGTGGTGGTGGACGATCTGAAGCTGGCCTCGCACAAGACCAAGGATTTCGTCAACATCATCAACGCACTGGACCTGGACGGCACCACGCTGATCGTCTCCAACGGCGAAAACGACAAGAATCTCATGCTGGCGTCGCGCAATGTCGTTGGCGTGACGATGACCACCGGCGCGGAACTGAACACCTACGACGTGCTCCGCCCGGACAAACTGCTCTTCACCAAGAGCGGATTTGAACAGCTCGAAGCCCGTCTCAACAAGGAATAA
PROTEIN sequence
Length: 210
MKISIKNTAGKDQGELEVKFALIENGKGTQAVHDAVTAYRAAQRSGTACTKNVGEVSGSNKKPWRQKGTGRARAGSHQSPLWVGGGVVFGPKPRDFRKKISKKTRALALRKALSERLKAGDVVVVDDLKLASHKTKDFVNIINALDLDGTTLIVSNGENDKNLMLASRNVVGVTMTTGAELNTYDVLRPDKLLFTKSGFEQLEARLNKE*