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berkeley_reactor_200306_planktonic_scaffold_84741_32

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(34612..35595)

Top 3 Functional Annotations

Value Algorithm Source
PREDICTED: probable RuBisCO transcriptional regulator-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C180BC similarity UNIREF
DB: UNIREF100
  • Identity: 46.3
  • Coverage: 285.0
  • Bit_score: 253
  • Evalue 1.60e-64
Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:KGB57726.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 44.9
  • Coverage: 285.0
  • Bit_score: 249
  • Evalue 4.20e-63
LysR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 46.3
  • Coverage: 285.0
  • Bit_score: 247
  • Evalue 3.20e-63

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Taxonomy

Sphingopyxis sp. LC363 → Sphingopyxis → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 984
ATGAATCCGGCATTTGAAAACCCGCAATGGTTGAACTACCACCATCTCCGCCATTTCTGGATGATCGCGCGGCACCGCAGCATGACCCAGGCGGCGGGAAAGTTGAAAATCTCGCAGTCCACCCTGAGCGAGCAACTGGCCGAGCTGGAAAACTGGCTCGGCCGGCCGCTGTTCGAGCGGCACGGCAAACGGCTGCATCTCACCGACGCCGGCCGCATTGCCGCGGAATATGCCGACACGATCTTCTCCGCGGGACACGAGCTGATCACCCGCTTCCGTCAGTCCGGCGAAAACCGGGAACGCGTGCTGCGGATCGGCGCGGTCGGCCCGCTTTCCAAGAACCTGCAATATGATTTTGTCCAGCCGCTGCTGGCCGATGCGCGCACCCGGGTGGTGGTGGTGGCCGGACCGTTAAACGAACTGACCCGGCAGCTTCGCGAGCACAAATTGGACCTGGTCCTGTCCAACATCCGCCTTCGCAGCGACCGGGACCAGGACGTTTTCAATCATCTGCTGGGCGAGGTGCCGGTGTTTCTTGTCGGCGGCAAAAAGGCGCGGCTGCCCGCCAAAAAATTTCCGCAGTGCCTGAAGCAGGTTCCCCTGTTCCTGCCCAGCTATCAAAGCGATGTCCGCGCGGAATTCGAGCAGATGCTTTCCGCCGCGGGCATCGAGCCGTTCATCCACGCGGAGGTGGACGACATGGCCCTGCTGCGGCTGCTGGCCCTGAGCGGCCAGGGACTGGCGCTGGTGTCGAAGATCGTCGTGGAAGGCGAGCTCGACTCGAGCAAGATCAAATTCATGCAGCGCGTGCCGGGGCTGTCCGAACGGTTTTACGCCTTGAGCGTCCGCAAAAAATTCGCCAATGCCTGGCTGACGGAAATTGTGGAGGTTTTCCGCGCGCGCCTGCGGGAACTGGTGGCCCGCGGCAACACGCAGAAAGGCAGTGCAAAACCGGTCGCGGCACCGGTGGATCAAGGCCGTTGA
PROTEIN sequence
Length: 328
MNPAFENPQWLNYHHLRHFWMIARHRSMTQAAGKLKISQSTLSEQLAELENWLGRPLFERHGKRLHLTDAGRIAAEYADTIFSAGHELITRFRQSGENRERVLRIGAVGPLSKNLQYDFVQPLLADARTRVVVVAGPLNELTRQLREHKLDLVLSNIRLRSDRDQDVFNHLLGEVPVFLVGGKKARLPAKKFPQCLKQVPLFLPSYQSDVRAEFEQMLSAAGIEPFIHAEVDDMALLRLLALSGQGLALVSKIVVEGELDSSKIKFMQRVPGLSERFYALSVRKKFANAWLTEIVEVFRARLRELVARGNTQKGSAKPVAAPVDQGR*