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berkeley_reactor_200306_planktonic_scaffold_84741

Search features with annotation key words

Displaying items 1-30 of 85 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_84741_1
unknown

Not on your lists

comp(78..500)
DNA (423bp) protein (141aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_84741_2
unknown

Not on your lists

comp(504..1175)
DNA (672bp) protein (224aa)
putative signaling protein
berkeley_reactor_200306_planktonic_scaffold_84741_3
unknown

Not on your lists

comp(1224..1847)
DNA (624bp) protein (208aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_84741_4
unknown

Not on your lists

comp(1844..2671)
DNA (828bp) protein (276aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_84741_5
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(2761..3867)
DNA (1107bp) protein (369aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
tRNA-dihydrouridine synthase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XI73_9BACT
hydrogenase
berkeley_reactor_200306_planktonic_scaffold_84741_6
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

3914..5998
DNA (2085bp) protein (695aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGF4_9BACT
hflB; ATP-dependent Zn protease FtsH
berkeley_reactor_200306_planktonic_scaffold_84741_7
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(6075..6593)
DNA (519bp) protein (173aa)
Anti-sigma-factor antagonist n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XNK5_9BACT
Anti-sigma-factor antagonist {ECO:0000313|EMBL:EEF58545.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
anti-sigma-factor antagonist
berkeley_reactor_200306_planktonic_scaffold_84741_8
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(6825..7955)
DNA (1131bp) protein (377aa)
DNA polymerase III delta n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XNK6_9BACT
DNA polymerase III delta {ECO:0000313|EMBL:EEF58546.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
DNA polymerase III subunit delta
berkeley_reactor_200306_planktonic_scaffold_84741_9
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(7957..8415)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XNK7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58547.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_84741_10
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

8543..9724
DNA (1182bp) protein (394aa)
endo-1,4-beta-xylanase n=1 Tax=Spirosoma luteum RepID=UPI000368975D
Uncharacterized protein {ECO:0000313|EMBL:CCH53593.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
glycoside hydrolase
berkeley_reactor_200306_planktonic_scaffold_84741_11
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(9764..13852)
DNA (4089bp) protein (1363aa)
Methionine synthase (B12-dependent) {ECO:0000313|EMBL:ABF40849.1}; EC=2.1.1.13 {ECO:0000313|EMBL:ABF40849.1};; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
5-methyltetrahydrofolate--homocysteine methyltransferase n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00036C7F54
methionine synthase
berkeley_reactor_200306_planktonic_scaffold_84741_12
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

14054..16822
DNA (2769bp) protein (923aa)
pyruvate phosphate dikinase (EC:2.7.9.1)
Pyruvate phosphate dikinase {ECO:0000313|EMBL:AHF93178.1}; EC=2.7.9.1 {ECO:0000313|EMBL:AHF93178.1};; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
Pyruvate, phosphate dikinase n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1INF1_9BACT
berkeley_reactor_200306_planktonic_scaffold_84741_13
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

16911..17135
DNA (225bp) protein (75aa)
Putative uncharacterized protein id=4326338 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
berkeley_reactor_200306_planktonic_scaffold_84741_14
RBG_16_Ignavibacteria_35_7_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

17128..17349
DNA (222bp) protein (74aa)
Putative periplasmic or secreted lipoprotein n=1 Tax=Synechococcus sp. PCC 7502 RepID=K9T000_9SYNE
putative periplasmic or secreted lipoprotein
Tax=RBG_16_Ignavibacteria_35_7_curated
berkeley_reactor_200306_planktonic_scaffold_84741_15
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

17742..18404
DNA (663bp) protein (221aa)
Cytochrome c family protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XE44_9BACT
Cytochrome c family protein {ECO:0000313|EMBL:EEF61935.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
cytochrome c family protein
berkeley_reactor_200306_planktonic_scaffold_84741_16
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

18525..21758
DNA (3234bp) protein (1078aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI00037E2077
Fe-S-cluster-containing hydrogenase components 1-like protein
Tax=GWF2_Verrucomicrobia_62_7_curated
berkeley_reactor_200306_planktonic_scaffold_84741_17
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

21758..23182
DNA (1425bp) protein (475aa)
Polysulphide reductase NrfD n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XE42_9BACT
Polysulphide reductase NrfD {ECO:0000313|EMBL:EEF61933.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
polysulfide reductase NrfD
berkeley_reactor_200306_planktonic_scaffold_84741_18
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

23179..23718
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XE41_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61932.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_84741_19
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

23718..24371
DNA (654bp) protein (218aa)
Cytochrome c class I n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XE40_9BACT
Cytochrome c class I {ECO:0000313|EMBL:EEF61931.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
cytochrome C
berkeley_reactor_200306_planktonic_scaffold_84741_20
RBG_16_Caldithrix_48_16_curated, Caldithrix, Bacteria

Not on your lists

24373..25614
DNA (1242bp) protein (414aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI00037D6A9A
hypothetical protein
Tax=RBG_16_Caldithrix_48_16_curated
berkeley_reactor_200306_planktonic_scaffold_84741_21
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

25611..26006
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XE37_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61928.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_84741_22
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

26003..27454
DNA (1452bp) protein (484aa)
Cytochrome c oxidase subunit I n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XE36_9BACT
Cytochrome c oxidase subunit I {ECO:0000313|EMBL:EEF61927.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
membrane protein
berkeley_reactor_200306_planktonic_scaffold_84741_23
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

27451..28317
DNA (867bp) protein (289aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI00037D230A
cytochrome C oxidase mono-heme subunit/FixO
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_84741_24
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

28325..28927
DNA (603bp) protein (201aa)
Cytochrome c class I n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XE34_9BACT
Cytochrome c class I {ECO:0000313|EMBL:EEF61925.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
class I cytochrome c
berkeley_reactor_200306_planktonic_scaffold_84741_25
unknown

Not on your lists

29164..30054
DNA (891bp) protein (297aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_84741_26
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(30048..31091)
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XE33_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61924.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
putative Fe-S protein
berkeley_reactor_200306_planktonic_scaffold_84741_27
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(31096..31626)
DNA (531bp) protein (177aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
aroK; shikimate kinase (EC:2.7.1.71)
Shikimate kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XE32_9BACT
berkeley_reactor_200306_planktonic_scaffold_84741_28
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

31713..32285
DNA (573bp) protein (191aa)
Maf-like protein Cflav_PD0298 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSF1_9BACT
Maf-like protein Cflav_PD0298 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
septum formation protein Maf
berkeley_reactor_200306_planktonic_scaffold_84741_29
unknown

Not on your lists

comp(32329..32619)
DNA (291bp) protein (97aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_84741_30
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

32796..33098
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGY3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60904.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
Displaying items 1-30 of 85 in total

View Taxonomy