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berkeley_reactor_200306_planktonic_scaffold_84741

Search features with annotation key words

Displaying items 61-85 of 85 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_84741_61
unknown

Not on your lists

comp(62843..63151)
DNA (309bp) protein (103aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_84741_62
unknown

Not on your lists

63185..63439
DNA (255bp) protein (85aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_84741_63
unknown

Not on your lists

63460..65466
DNA (2007bp) protein (669aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_84741_64
unknown

Not on your lists

65717..65878
DNA (162bp) protein (54aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_84741_65
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

65878..67221
DNA (1344bp) protein (448aa)
Zonular occludens toxin (Zot) n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6AYY5_9BACT
Zonular occludens toxin (Zot) {ECO:0000313|EMBL:EIQ00227.1}; Flags: Precursor;; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
berkeley_reactor_200306_planktonic_scaffold_84741_66
unknown

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comp(67218..67574)
DNA (357bp) protein (119aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_84741_67
unknown

Not on your lists

comp(67645..68223)
DNA (579bp) protein (193aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_84741_68
unknown

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69469..70131
DNA (663bp) protein (221aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_84741_69
Halogranum salarium, Halogranum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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comp(70147..70935)
DNA (789bp) protein (263aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Halogranum salarium B-1 RepID=J3EUW3_9EURY
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EJN58252.1}; TaxID=1210908 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae.;" source="Halogranum salarium B-1.;"
short-chain dehydrogenase
berkeley_reactor_200306_planktonic_scaffold_84741_70
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(70942..72291)
DNA (1350bp) protein (450aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Signal peptidase I n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGG0_9BACT
lepB; Signal peptidase I
berkeley_reactor_200306_planktonic_scaffold_84741_71
unknown

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comp(72332..72529)
DNA (198bp) protein (66aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_84741_72
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(72544..74334)
DNA (1791bp) protein (597aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Elongation factor 4 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGF8_9BACT
GTP-binding protein LepA
berkeley_reactor_200306_planktonic_scaffold_84741_73
Paraprevotella clara CAG:116, Paraprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(74573..76618)
DNA (2046bp) protein (682aa)
Fibronectin type III domain protein n=1 Tax=Paraprevotella clara CAG:116 RepID=R5NC99_9BACT
Fibronectin type III domain protein {ECO:0000313|EMBL:CCZ01343.1}; TaxID=1263095 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Paraprevotella; environmental samples.;" source="Paraprevotella clara CAG:116.;"
transmembrane protein
berkeley_reactor_200306_planktonic_scaffold_84741_74
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(76639..79110)
DNA (2472bp) protein (824aa)
Uncharacterized protein n=2 Tax=Bacteroides fragilis RepID=I3HSH1_BACFG
Uncharacterized protein {ECO:0000313|EMBL:EIY99342.1}; TaxID=997883 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis CL07T12C05.;"
putative glycosyl hydrolase
berkeley_reactor_200306_planktonic_scaffold_84741_75
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(79158..84023)
DNA (4866bp) protein (1622aa)
Conserved hypothethical protein, putative glycosyl hydrolase protein n=1 Tax=Ralstonia solanacearum RepID=D8N0M5_RALSL
conserved hypothethical protein, putative glycosyl hydrolase protein
Conserved hypothethical protein, putative glycosyl hydrolase protein {ECO:0000313|EMBL:CBJ35175.1}; TaxID=305 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum (Pseudomonas solanacearum).;"
berkeley_reactor_200306_planktonic_scaffold_84741_76
unknown

Not on your lists

comp(84045..84251)
DNA (207bp) protein (69aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_84741_77
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(84432..85571)
DNA (1140bp) protein (380aa)
Transcriptional regulator, LacI family n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IZY2_9BACT
LacI family transcriptional regulator
LacI family transcriptional regulator {ECO:0000313|EMBL:AHF89719.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_84741_78
Caldicellulosiruptor saccharolyticus, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

85986..87161
DNA (1176bp) protein (392aa)
Glycosyl hydrolase, family 88 n=1 Tax=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) RepID=A4XN13_CALS8
glycosyl hydrolase, family 88
Glycosyl hydrolase, family 88 {ECO:0000313|EMBL:ABP68298.1}; TaxID=351627 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 /; Tp8T 6331).;"
berkeley_reactor_200306_planktonic_scaffold_84741_79
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

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comp(87177..89132)
DNA (1956bp) protein (652aa)
F5/8 type C domain protein id=3865945 bin=GWF2_Lentisphaerae_50_93 species=unknown genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
endo-1,4-beta-xylanase
Tax=GWF2_Lentisphaerae_50_93_curated
berkeley_reactor_200306_planktonic_scaffold_84741_80
Bacteroides intestinalis CAG:564, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(89155..90555)
DNA (1401bp) protein (467aa)
Carbohydrate binding module (Family 6) n=2 Tax=Bacteroides RepID=B3C9C5_9BACE
Carbohydrate binding module (Family 6) {ECO:0000313|EMBL:CCY82723.1}; TaxID=1263049 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides intestinalis CAG:564.;"
Beta-xylosidase
berkeley_reactor_200306_planktonic_scaffold_84741_81
Bacteroides thetaiotaomicron CAG:40, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(90552..92315)
DNA (1764bp) protein (588aa)
Beta-xylosidase n=1 Tax=Bacteroides thetaiotaomicron CAG:40 RepID=R7KZB6_9BACE
Beta-xylosidase {ECO:0000313|EMBL:CDE80267.1}; TaxID=1263054 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides thetaiotaomicron CAG:40.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_84741_82
unknown

Not on your lists

92477..92746
DNA (270bp) protein (90aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_84741_83
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

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comp(92738..93016)
DNA (279bp) protein (93aa)
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
berkeley_reactor_200306_planktonic_scaffold_84741_84
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(93013..93297)
DNA (285bp) protein (95aa)
Addiction module antitoxin, RelB/DinJ family n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZQY5_9FIRM
Addiction module antitoxin, RelB/DinJ family {ECO:0000313|EMBL:EDM87992.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
toxin-antitoxin system, antitoxin component
berkeley_reactor_200306_planktonic_scaffold_84741_85
unknown

Not on your lists

93978..95849
DNA (1872bp) protein (624aa)

This feature has no annotations

Displaying items 61-85 of 85 in total

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