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berkeley_reactor_200306_planktonic_scaffold_84741_49

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: 54902..56272

Top 3 Functional Annotations

Value Algorithm Source
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 75.6
  • Coverage: 454.0
  • Bit_score: 684
  • Evalue 7.20e-194
seryl-tRNA synthetase (EC:6.1.1.11) similarity KEGG
DB: KEGG
  • Identity: 49.2
  • Coverage: 455.0
  • Bit_score: 444
  • Evalue 3.30e-122
Serine--tRNA ligase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGG2_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 75.6
  • Coverage: 454.0
  • Bit_score: 684
  • Evalue 5.10e-194

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1371
GTGCTCGACATTAAATTGATCCGCGAAAAAACTGATTTGGTGCGTCAACGCCTCGCCACCCGGAACGGCGGTGACGAAGCGAAAATTGATGAACTGCTCAAATTCGATGAGCTGCGGCGCAAGACGCTGGCCGAAGTGGAAGCGCTGAAATCCCAGCGCAACAAGGTCAGCAAGGAGATCGGCGCGTTGATGGGGCAACGATCAAAATTACCTGATGTAGTTTCAATTTCAGTTAATTCACCGGATGAAATTGCAAGGCGCGCGAAAGAAATAATTAAAGGCATCGAAACAAAAAAGGCCGAAACGAAAGATTTGGGCGACAAGATTGCCGCGCTGGACAAGGAAGCCGCCGCCGCCGAAGCGGCCCGCGACGCATTGATGCTGCAACTGCCCAATCTGCCGCACGAATCAGTCACCGTCGGCAAAAGCGCCGGGGAGAATCCTGAGATTCGCGTGCATGGCGCGAAGGCGAATTACGATTTCAAGCCCAAGACGCACGTCGAATTGTGCGAATCGCTGAAGCTGGTGGATTTCGCCCGCGCCGCGAAACTTTCCGGCAGCGGTTTCCTGCTCTACACGAACTGGGGCGCGCGACTGGAACGCGCGTTGATCCAGTTTCTGCTCGATCTCCACATCACGCAGCACGATTACACGGAGGTTTCGCCGCCGCTCATGGTTGGTCCGCAATGTCTCGTCGGCGTCGGCCAGTTTCCCAAGTTCAAAGATCAGTATTACGGCGTGGCCGAAGGCGACCAGGCGGGGGAACTGGGCAAATTGTATTTGGTGCCCACGGCCGAAACACCGGTGGCGAATATTCATCGCGAAGAAATTTTGGCGGAGAAACAACTGCCGGTTCGCTACTGCGCTTACACGCCGTGTTTTCGCGGTGAGGCGGGCGCGGCGGGCGTCGGCACACGCGGCATGATTCGCGTGCATCAGTTCGACAAGGTGGAACTCATTAAAATCGTCAAGCCGGAGCACGGTTACGACGAGTTGGAAAAGATGGTGGCGAACGCGGAAAAGGTTCTCCAACTGCTCGGCCTGCATTACCGCGTGATCATGCTCTGCACTGGCGACATGGGATTCGGCAGCGCCAAGACCTACGACATCGAAGTCTGGGCGCCAGGGCAGGGGAGCTATCTCGAAGTTTCGAGCTGTTCCAACTGCGAAGATTTCCAGTCGCGCCGGATGAATCTGCGTTTCAAGACCGAAACCGGCGAAAACAAATTCCCGCACATTCTCAACGGCAGCGGCACCGCGCTGGCGCGATTATTTGTGGCGTTGATCGAAACCCATCAGCAAGCCGATGGCAGCGTGCGGATTCCCGAGGCGTTGCAGCCGTATTTAAAAACCGACCGCATCACTGCCTGA
PROTEIN sequence
Length: 457
VLDIKLIREKTDLVRQRLATRNGGDEAKIDELLKFDELRRKTLAEVEALKSQRNKVSKEIGALMGQRSKLPDVVSISVNSPDEIARRAKEIIKGIETKKAETKDLGDKIAALDKEAAAAEAARDALMLQLPNLPHESVTVGKSAGENPEIRVHGAKANYDFKPKTHVELCESLKLVDFARAAKLSGSGFLLYTNWGARLERALIQFLLDLHITQHDYTEVSPPLMVGPQCLVGVGQFPKFKDQYYGVAEGDQAGELGKLYLVPTAETPVANIHREEILAEKQLPVRYCAYTPCFRGEAGAAGVGTRGMIRVHQFDKVELIKIVKPEHGYDELEKMVANAEKVLQLLGLHYRVIMLCTGDMGFGSAKTYDIEVWAPGQGSYLEVSSCSNCEDFQSRRMNLRFKTETGENKFPHILNGSGTALARLFVALIETHQQADGSVRIPEALQPYLKTDRITA*