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berkeley_reactor_200306_planktonic_scaffold_128857_24

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: 30619..31764

Top 3 Functional Annotations

Value Algorithm Source
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 80.5
  • Coverage: 379.0
  • Bit_score: 589
  • Evalue 2.60e-165
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267) similarity KEGG
DB: KEGG
  • Identity: 59.3
  • Coverage: 383.0
  • Bit_score: 427
  • Evalue 2.00e-117
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XS10_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 80.5
  • Coverage: 379.0
  • Bit_score: 589
  • Evalue 1.90e-165

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1146
ATGAAGAACGTCGTCCTCCTCGGTTCCACCGGCTCCATCGGCACCAGCACCGTCAAAGTCGCGGAAGATTTGCCCGGCAAAATCCGGCTCATCGGCCTGGCGGCGGGAAACAATGTGGACCTCCTCATTGAGCAAACGCGCCGGCACCAGCCGGCGGTTGTCTCCATTTCCGATCCGGCCAGGGTCAACACTTTGAAAACGGCGCTCGGCGACGCGGTCCAAGTTTGTTCCGGCGACGAAGGATTGCTCAAGCTGGCCACGCTGCCGGAAGCGGACATCGTCTTGATTGCCATCGTGGGCACGGCGGGATTGCAGCCGGCGTTGGCGGCCATCCGCGCGGGCAAGGACATCGCCGTGGCGTCCAAGGAAATCCTCGTCATGGCGGGTGAAATCGTCATGAGCGAAGCGCGCAAACACGGCGTGAAAGTGCTCGCCGTGGACAGCGAGCATTCCGCGATTTTTCAGTGTCTCGACGGCAAACCGCCGGCGTCCGTCCGCAAACTCTGGCTGACCGCCAGCGGCGGCCCGTTCCGCGACAAAACCGACTGGCCGAAGGAAAAGTTCTCTGAAATCACCGTCGAACGCGCGCTCAAACATCCCTCCTGGGTGATGGGCCGGAAAATCACGATTGATTCCGCAACGCTCTTCAACAAGGGCCTGGAAATGATCGAGGCGCGCTGGCTGTTCGACATTGAAATGGCCCGCGTCGGCGTCGTGGTGCATCCGCAAAGCATCGTGCATTCGATGGTGGAATTTGTGGATGGCTCGCTCATCGCGCAGTTGTCCACGCCGGACATGTGCCTGCCGATTCAATACGCCCTGACGTATCCCGAACGCGCTGCGAGCGATCGTGTGCAGACGAATTTTCCAAAAATCGGGACGCTTACGTTTGAGGAGCCGGACACGGAGCGATTCCCGTCCGTTCTGCTCGCGCGGGAGGCGGGAGAAAAATGCGGCACCCTGCCGGCGGTGTTCAACGCGGCGAACGAGGTGGCCGTGGACGCGTTCGTGAACCGCAAAATCAATTTTCCGCAAATCACCGAAACCGTGCGGCGCGTGATGGCCGCGCACCGGGTGGTGGATCATCCGACGCTGGAGCAGATTTTGGAGGCGGACAACTGGGCGCGCCGGGAGGCATCGCGGTAA
PROTEIN sequence
Length: 382
MKNVVLLGSTGSIGTSTVKVAEDLPGKIRLIGLAAGNNVDLLIEQTRRHQPAVVSISDPARVNTLKTALGDAVQVCSGDEGLLKLATLPEADIVLIAIVGTAGLQPALAAIRAGKDIAVASKEILVMAGEIVMSEARKHGVKVLAVDSEHSAIFQCLDGKPPASVRKLWLTASGGPFRDKTDWPKEKFSEITVERALKHPSWVMGRKITIDSATLFNKGLEMIEARWLFDIEMARVGVVVHPQSIVHSMVEFVDGSLIAQLSTPDMCLPIQYALTYPERAASDRVQTNFPKIGTLTFEEPDTERFPSVLLAREAGEKCGTLPAVFNAANEVAVDAFVNRKINFPQITETVRRVMAAHRVVDHPTLEQILEADNWARREASR*