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berkeley_reactor_200306_planktonic_scaffold_128857

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Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_128857_1
unknown

Not on your lists

1..93
DNA (93bp) protein (31aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_128857_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(336..2117)
DNA (1782bp) protein (594aa)
DNA polymerase III, subunits gamma and tau {ECO:0000313|EMBL:EEF58642.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EEF58642.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
DNA polymerase III subunits gamma and tau (EC:2.7.7.7)
DNA polymerase III, subunits gamma and tau n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XNI3_9BACT
berkeley_reactor_200306_planktonic_scaffold_128857_3
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(2392..3021)
DNA (630bp) protein (210aa)
Outer membrane chaperone Skp (OmpH) n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIE5_9BACT
Outer membrane chaperone Skp (OmpH) {ECO:0000313|EMBL:EEF60406.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
outer membrane chaperone Skp
berkeley_reactor_200306_planktonic_scaffold_128857_4
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3074..5512)
DNA (2439bp) protein (813aa)
Uncharacterized protein n=1 Tax=Gloeobacter kilaueensis JS1 RepID=U5QNL5_9CYAN
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
berkeley_reactor_200306_planktonic_scaffold_128857_5
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(5514..7976)
DNA (2463bp) protein (821aa)
Outer membrane protein assembly complex, YaeT protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIE6_9BACT
Outer membrane protein assembly complex, YaeT protein {ECO:0000313|EMBL:EEF60407.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Outer membrane protein
berkeley_reactor_200306_planktonic_scaffold_128857_6
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(7980..9467)
DNA (1488bp) protein (496aa)
Replicative DNA helicase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIE7_9BACT
Replicative DNA helicase {ECO:0000313|EMBL:EEF60408.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
replicative DNA helicase
berkeley_reactor_200306_planktonic_scaffold_128857_7
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

9840..11072
DNA (1233bp) protein (411aa)
Major facilitator superfamily MFS_1 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIE9_9BACT
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:EEF60410.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
major facilitator superfamily transporter
berkeley_reactor_200306_planktonic_scaffold_128857_8
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(11166..11603)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBA7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF62792.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
EF hand repeat-containing protein
berkeley_reactor_200306_planktonic_scaffold_128857_9
Chlorobaculum parvum, Chlorobaculum, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

comp(11640..12089)
DNA (450bp) protein (150aa)
PAS/PAC sensor hybrid histidine kinase n=1 Tax=Chlorobaculum parvum (strain NCIB 8327) RepID=B3QL88_CHLP8
PAS/PAC sensor hybrid histidine kinase
PAS/PAC sensor hybrid histidine kinase {ECO:0000313|EMBL:ACF12326.1}; TaxID=517417 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobaculum.;" source="Chlorobaculum parvum (strain NCIB 8327) (Chlorobium vibrioforme subsp.; thiosulfatophilum (strain DSM 263 / NCIB 8327)).;"
berkeley_reactor_200306_planktonic_scaffold_128857_10
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

12291..12941
DNA (651bp) protein (217aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZX13_OPITP
histidine kinase
Histidine kinase {ECO:0000313|EMBL:AKC81775.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
berkeley_reactor_200306_planktonic_scaffold_128857_11
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

12938..14458
DNA (1521bp) protein (507aa)
integral membrane sensor signal transduction histidine kinase (EC:2.7.13.3)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
integral membrane sensor signal transduction histidine kinase n=1 Tax=Schlesneria paludicola RepID=UPI00029ACF37
berkeley_reactor_200306_planktonic_scaffold_128857_12
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

14704..15234
DNA (531bp) protein (177aa)
Response regulator receiver protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XS02_9BACT
sensory box histidine kinase/response regulator
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
berkeley_reactor_200306_planktonic_scaffold_128857_13
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(15660..16841)
DNA (1182bp) protein (394aa)
Aldo/keto reductase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIE4_9BACT
Aldo/keto reductase {ECO:0000313|EMBL:EEF60405.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Predicted oxidoreductases of the aldo/keto reductase family
berkeley_reactor_200306_planktonic_scaffold_128857_14
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

16963..17727
DNA (765bp) protein (255aa)
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSS8_9BACT
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase {ECO:0000313|EMBL:EEF57095.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
NCAIR mutase-like protein
berkeley_reactor_200306_planktonic_scaffold_128857_15
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

17724..19055
DNA (1332bp) protein (444aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI00036A2316
Uncharacterized protein {ECO:0000313|EMBL:EEF57097.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_128857_16
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

19098..19931
DNA (834bp) protein (278aa)
ExsB family protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSJ6_9BACT
ExsB family protein {ECO:0000313|EMBL:EEF57196.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ExsB family protein
berkeley_reactor_200306_planktonic_scaffold_128857_17
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(20012..21169)
DNA (1158bp) protein (386aa)
Deoxyguanosinetriphosphate triphosphohydrolase-like protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XG79_9BACT
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000256|HAMAP-Rule:MF_01212}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
deoxyguanosinetriphosphate triphosphohydrolase
berkeley_reactor_200306_planktonic_scaffold_128857_18
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(21178..22413)
DNA (1236bp) protein (412aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XG78_9BACT
lytB; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
berkeley_reactor_200306_planktonic_scaffold_128857_19
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

comp(22546..24777)
DNA (2232bp) protein (744aa)
Sialic acid-specific 9-O-acetylesterase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C1U8_9PLAN
sialic acid-specific 9-O-acetylesterase
Tax=CG_Arma_01
berkeley_reactor_200306_planktonic_scaffold_128857_20
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25129..26454
DNA (1326bp) protein (442aa)
carboxyl-terminal protease (EC:3.4.21.102); K03797 carboxyl-terminal processing protease [EC:3.4.21.102] id=14629877 bin=bin8_Chloro species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi
carboxyl-terminal protease (EC:3.4.21.102)
Prc, Periplasmic protease {ECO:0000313|EMBL:KFZ89987.1}; TaxID=160660 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
berkeley_reactor_200306_planktonic_scaffold_128857_21
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(26858..27733)
DNA (876bp) protein (292aa)
Xylose isomerase domain protein TIM barrel n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XF94_9BACT
Xylose isomerase domain protein TIM barrel {ECO:0000313|EMBL:EEF61592.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
xylose isomerase domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_128857_22
Terriglobus roseus, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

27947..29437
DNA (1491bp) protein (497aa)
Putative dehydrogenase n=1 Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) RepID=I3ZIU4_TERRK
putative dehydrogenase
Putative dehydrogenase {ECO:0000313|EMBL:AFL89162.1}; TaxID=926566 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63).;"
berkeley_reactor_200306_planktonic_scaffold_128857_23
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

29679..30611
DNA (933bp) protein (311aa)
Phosphatidate cytidylyltransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XS11_9BACT
Phosphatidate cytidylyltransferase {ECO:0000313|EMBL:EEF57382.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
cdsA; phosphatidate cytidylyltransferase
berkeley_reactor_200306_planktonic_scaffold_128857_24
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

30619..31764
DNA (1146bp) protein (382aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XS10_9BACT
berkeley_reactor_200306_planktonic_scaffold_128857_25
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(31775..32236)
DNA (462bp) protein (154aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Phosphodiesterase, MJ0936 family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBU0_9BACT
phosphoesterase
berkeley_reactor_200306_planktonic_scaffold_128857_26
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(32233..32889)
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBT9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF62407.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_128857_27
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(32927..33613)
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XND2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58685.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_128857_28
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(33610..35001)
DNA (1392bp) protein (464aa)
Iron-sulfur cluster binding protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XND3_9BACT
Iron-sulfur cluster binding protein {ECO:0000313|EMBL:EEF58686.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_128857_29
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35040..35768)
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9WQ60_9CYAN
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_49_23_curated
berkeley_reactor_200306_planktonic_scaffold_128857_30
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

36000..37025
DNA (1026bp) protein (342aa)
Integrase family protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRD0_9BACT
Integrase family protein {ECO:0000313|EMBL:EEF57617.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Displaying items 1-30 of 35 in total

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