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berkeley_reactor_200306_planktonic_scaffold_161060_90

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(111524..112975)

Top 3 Functional Annotations

Value Algorithm Source
RNA-splicing ligase RtcB {ECO:0000256|RuleBase:RU371113}; EC=6.5.1.- {ECO:0000256|RuleBase:RU371113};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 63.6
  • Coverage: 467.0
  • Bit_score: 594
  • Evalue 1.30e-166
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI00035EA918 similarity UNIREF
DB: UNIREF100
  • Identity: 63.4
  • Coverage: 464.0
  • Bit_score: 611
  • Evalue 5.80e-172
rtcB; RNA 2',3'-cyclic phosphate--5'-hydroxyl ligase similarity KEGG
DB: KEGG
  • Identity: 59.2
  • Coverage: 468.0
  • Bit_score: 535
  • Evalue 8.80e-150

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Taxonomy

Chthoniobacter flavus → Chthoniobacter → Spartobacteria → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1452
ATGCGCTTCCGGGGGATTATTTCTGATGCGGACGATGGAACGGCGGCGATTGTTGGCATGAACACGAAAGATTTTATCCGGCTGGGAATTCCGCTGGGCGAAGCGACTCGGCGGGCAACGGATTTCGTCGCCAAATTCGTTCTGGGCGGCGGCGACAAGTCACGGTTGGAGGACGAGGTAAAAGCCGTTGTCGCGAATCCTTCGGCATTTGTGGATGATTCGTTGCGGAAAGATTTTGCGCTGGCGCTGCTGGCCGCGCCGCCGCCGCCCCGCACCGAGCCGGTGAAGTATCGTCAGTGGGGCAAAGATCTCGAACCCGAGGCGGTGATGCAAATGGAGAAGGCGTGTCTGCTGCCGGTGGCGGTGGCCGGCGCGTTGATGCCGGATGCGCACGTCGGTTACGGCCTGCCGATCGGCGGCGTGCTGGCGACGGAAAATGCGGTGATCCCTTACGCCGTGGGCGTGGACATCGCCTGCCGCATGAAGCTGACGGTGCTCGACATTCCGTTGCGCGATTTGGAGCAGAAACAGGACCGGCTCAAACGCGCCATTGAAGCGGAGACGCGGTTTGGCGTGGGTGCGTCCTTTCGTCAGCGCCGCGAGCACGCGGTGCTGGATGCGGACTGGTCGGTGAGTCCGATCACCCGGCAGAACAAGGACAAGGCGTGGGCGCAACTCGGCACCAGCGGCAGCGGCAATCACTTTGTGGAATTCGGCTGGTTCACCGTGCCTGCCAAAATCCACGATCTCGAAGCGGGAACTTACGTGGCGCTGCTTTCGCACAGCGGCAGTCGCGGAACGGGGGCGGCGGTTTGCGATCATTATTCCAGGCTGGCCTTTGCGCAGTTCAAAGATTTGCCGGGCGAACTGAAACGGCTGGCGTGGCTGTCGCTGGATTCGCAGGAAGGCCGGGAATATTGGAGGGCCATGGAATTGATGGGCCAATACGCGGCGGCGAATCACGCGTGCATTCATCGTCATATTGCGGAGCATCTCGGCGCGCAGGTGCTGCTGGATCTGGAAAATCACCACAACTTTGCGTGGAAGGAACGGCACGTCATCGGCGGGGTGGAACACGAAGTGATCGTCCATCGCAAGGGCGCGACGCCGGCCGGCGCGGGGGTGCTGGGCATCATTCCCGGCTCGATGGCGACGCCGGGATTTGTGGTGAGCGGCCGGGGGAATGCGGAATCGTTGAATTCCTGTTCGCATGGCGCGGGGCGCGCCATGAGCCGCAAGGCCGCGAACCAAAAATTTAACTGGAAAGACGTGAGCCGCTTTCTCAAACAACAAGGCGTGACACTCATCAGCGCCGGGCTCGACGAAGTGCCGATGGCTTACAAAAACATTCGTGAAGTGATGGCCGCGCAGAAAGATCTGGTCGCGGTGCTGGGTGAATTTCAGCCCAAGCTGGTGAAAATGGCGCCGGCGGGGGAACGTCCCGAAGATTAA
PROTEIN sequence
Length: 484
MRFRGIISDADDGTAAIVGMNTKDFIRLGIPLGEATRRATDFVAKFVLGGGDKSRLEDEVKAVVANPSAFVDDSLRKDFALALLAAPPPPRTEPVKYRQWGKDLEPEAVMQMEKACLLPVAVAGALMPDAHVGYGLPIGGVLATENAVIPYAVGVDIACRMKLTVLDIPLRDLEQKQDRLKRAIEAETRFGVGASFRQRREHAVLDADWSVSPITRQNKDKAWAQLGTSGSGNHFVEFGWFTVPAKIHDLEAGTYVALLSHSGSRGTGAAVCDHYSRLAFAQFKDLPGELKRLAWLSLDSQEGREYWRAMELMGQYAAANHACIHRHIAEHLGAQVLLDLENHHNFAWKERHVIGGVEHEVIVHRKGATPAGAGVLGIIPGSMATPGFVVSGRGNAESLNSCSHGAGRAMSRKAANQKFNWKDVSRFLKQQGVTLISAGLDEVPMAYKNIREVMAAQKDLVAVLGEFQPKLVKMAPAGERPED*