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berkeley_reactor_200306_planktonic_scaffold_158606_51

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(60753..61688)

Top 3 Functional Annotations

Value Algorithm Source
Efflux transporter, RND family, MFP subunit id=1778312 bin=GWB2_Proteobacteria_55_19 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good similarity UNIREF
DB: UNIREF100
  • Identity: 41.3
  • Coverage: 201.0
  • Bit_score: 170
  • Evalue 2.20e-39
RND family efflux transporter, MFP subunit similarity KEGG
DB: KEGG
  • Identity: 34.9
  • Coverage: 232.0
  • Bit_score: 157
  • Evalue 3.20e-36
Tax=RifCSPlowO2_12_Nitrospirae_42_9_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 35.8
  • Coverage: 293.0
  • Bit_score: 177
  • Evalue 2.50e-41

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Taxonomy

RLO_Nitrospirae_42_9 → Nitrospirae → Bacteria

Sequences

DNA sequence
Length: 936
ATGAATTCTCGCATGAAACATATTTTTATTGTCCCGCTGCTGGCCGTCGCCCTGGCGGGTTGCGGAAAAAATGAAGCCGCCGTTGAAGCCACACCCGAAGTCGCGCATGAGCAAAACATGGTCACCTTGACCAAGGCGAATTTGGAACACATGACGCTGAAGGTTGAGCCGGTCGTGCTGGGCAATCTGGGCATGACGTTGAAGGCCGCTGGTCGCGTCAGTGCCAATTTGAACAAGACCGCCAAAGTCACGCCCACGCTCGAAGGCCGGCTCGTGAAACTGAATTTTGACTTGAACGACCGCGTGAAGGCGGGGGAGGTCCTGGCCCTCATCGAGTCGCCGGAGTTGCTCGGCAAACAGCTTGAACTCAAAGCGCCGATTGATGGGGTCATCATTGAGCGCAATGCGACCGTGGGCGAACTCGTGGACAAAGGCAGGGAAGTCTTCACCATCAGTGACCCGACCGGGCTTTGGGCGATTGCGGAAATCAAGGAGCGCGACATTGCCGCCGTTAAAGTCGGACAGGAAGCGACGTTCACGGTGTTGCCCTATCCGCAGGAATTATTTCGCGGCAAAGTCATTCTCGTTGGCAATCAGGTGGAAGCGGCGTCGCGCACGCTGGAGGTCCGGATCGCCGTGGACAATGCGGATGGACGCCTGAAGCCGGGCATGTTCGCCGACGTGGGGATAGTCACCACGATTCTCGACAACGTGCTGCTCATTCCCGACAGCGCCTTGCAGACGGATGGTGACAGCCAAATCGTCTTCGTGGCGCTCGACGGGAATAAGTTTGAAAAACGTGTCGTGAAACTCGGCGAAGAACAACAAGGCCGCGTGCAAGTGCTGGCGGGCTTGAAAGCGGGCGAACAAATCGCGACGGAAGGCAGTTTCATTTTGAAATCGGAAATGCTCAAAGGCGAACTCGGAGAGGAATAA
PROTEIN sequence
Length: 312
MNSRMKHIFIVPLLAVALAGCGKNEAAVEATPEVAHEQNMVTLTKANLEHMTLKVEPVVLGNLGMTLKAAGRVSANLNKTAKVTPTLEGRLVKLNFDLNDRVKAGEVLALIESPELLGKQLELKAPIDGVIIERNATVGELVDKGREVFTISDPTGLWAIAEIKERDIAAVKVGQEATFTVLPYPQELFRGKVILVGNQVEAASRTLEVRIAVDNADGRLKPGMFADVGIVTTILDNVLLIPDSALQTDGDSQIVFVALDGNKFEKRVVKLGEEQQGRVQVLAGLKAGEQIATEGSFILKSEMLKGELGEE*