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berkeley_reactor_200306_planktonic_scaffold_158606

Search features with annotation key words

Displaying items 1-30 of 200 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_158606_1
R_WOR_2_50_17, WOR-2, Bacteria

Not on your lists

comp(1500..1790)
DNA (291bp) protein (97aa)
CRISPR-associated endoribonuclease Cas2 n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1J084_9BACT
CRISPR-associated protein Cas2
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_50_17_curated
berkeley_reactor_200306_planktonic_scaffold_158606_2
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(1787..2857)
DNA (1071bp) protein (357aa)
CRISPR-associated endonuclease Cas1 n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1J085_9BACT
CRISPR-associated protein Cas4
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
berkeley_reactor_200306_planktonic_scaffold_158606_3
RIFOXYA2_FULL_Elusimicrobia_47_53_curated, Elusimicrobia, Bacteria

Not on your lists

comp(2877..3617)
DNA (741bp) protein (247aa)
CRISPR-associated endonuclease Cas1 n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1J085_9BACT
CRISPR-associated protein Cas4
Tax=RIFOXYA2_FULL_Elusimicrobia_47_53_curated
berkeley_reactor_200306_planktonic_scaffold_158606_4
RIFOXYA2_FULL_Elusimicrobia_47_53_curated, Elusimicrobia, Bacteria

Not on your lists

comp(3632..7825)
DNA (4194bp) protein (1398aa)
Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1J086_9BACT
hypothetical protein
Tax=RIFOXYA2_FULL_Elusimicrobia_47_53_curated
berkeley_reactor_200306_planktonic_scaffold_158606_5

Not on your lists

comp(8896..10413)
DNA (1518bp) protein (506aa)
P4 alpha zinc-binding domain protein n=1 Tax=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) RepID=D5ST64_PLAL2
Uncharacterized protein {ECO:0000313|EMBL:KKL99558.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
P4 alpha zinc-binding domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_158606_6

Not on your lists

comp(10388..10684)
DNA (297bp) protein (99aa)
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49255.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
berkeley_reactor_200306_planktonic_scaffold_158606_7
unknown

Not on your lists

comp(10838..11464)
DNA (627bp) protein (209aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI000174556B
berkeley_reactor_200306_planktonic_scaffold_158606_8
RBG_16_Planctomycetes_64_12_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(11468..11815)
DNA (348bp) protein (116aa)
Tax=RBG_16_Planctomycetes_64_12_curated
berkeley_reactor_200306_planktonic_scaffold_158606_9
unknown

Not on your lists

comp(12115..12882)
DNA (768bp) protein (256aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_158606_10
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(12885..14273)
DNA (1389bp) protein (463aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI000377BC63
Integrase domain protein SAM domain protein {ECO:0000313|EMBL:EEF63304.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_158606_trna_2
unknown

Not on your lists

comp(14216..14287)
DNA (72bp)
transferRNA Asn
berkeley_reactor_200306_planktonic_scaffold_158606_11
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(14343..15194)
DNA (852bp) protein (284aa)
Formamidopyrimidine-DNA glycosylase {ECO:0000256|SAAS:SAAS00020852}; EC=3.2.2.- {ECO:0000256|SAAS:SAAS00275239};; EC=3.2.2.23 {ECO:0000256|SAAS:SAAS00020832};; EC=4.2.99.18 {ECO:0000256|SAAS:SAAS00054019};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Formamidopyrimidine-DNA glycosylase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRC9_9BACT
mutM; formamidopyrimidine-DNA glycosylase
berkeley_reactor_200306_planktonic_scaffold_158606_12
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(15259..15981)
DNA (723bp) protein (241aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
pyrH; uridylate kinase (EC:2.7.4.-)
Uridylate kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRC7_9BACT
berkeley_reactor_200306_planktonic_scaffold_158606_13
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(16357..17145)
DNA (789bp) protein (263aa)
Elongation factor Ts n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRC6_9BACT
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
tsf; elongation factor Ts
berkeley_reactor_200306_planktonic_scaffold_158606_14
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


comp(17292..18071)
DNA (780bp) protein (260aa)
30S ribosomal protein S2 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRC5_9BACT
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
rpsB; 30S ribosomal protein S2
berkeley_reactor_200306_planktonic_scaffold_158606_15
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

18558..21122
DNA (2565bp) protein (855aa)
Multi-sensor signal transduction histidine kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DBE0_9BACT
Multi-sensor signal transduction histidine kinase {ECO:0000313|EMBL:EDY16230.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
multi-sensor signal transduction histidine kinase
berkeley_reactor_200306_planktonic_scaffold_158606_16
unknown

Not on your lists

21119..21250
DNA (132bp) protein (44aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_158606_17
RBG_13_OP3X_46_9_curated, OP3X, Bacteria

Not on your lists

21213..21614
DNA (402bp) protein (134aa)
response regulator receiver protein id=14627901 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=bin7_NC10_sister organism_group=NC10
response regulator receiver protein
Tax=RBG_13_OP3X_46_9_curated
berkeley_reactor_200306_planktonic_scaffold_158606_18
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(21667..22464)
DNA (798bp) protein (266aa)
1,4-dihydroxy-6-naphtoate synthase {ECO:0000256|HAMAP-Rule:MF_00996}; EC=4.1.-.- {ECO:0000256|HAMAP-Rule:MF_00996};; Menaquinone biosynthetic enzyme MqnD {ECO:0000256|HAMAP-Rule:MF_00996}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XN30_9BACT
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_158606_19
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(23107..23550)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRQ9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57474.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_158606_20
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23586..25163)
DNA (1578bp) protein (526aa)
peptidase n=1 Tax=Xanthomonas vasicola RepID=UPI0001CBFB53
Peptidyl-asp metalloendopeptidase {ECO:0000313|EMBL:GAE52242.1}; TaxID=1414836 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. pruni str. MAFF 311562.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_158606_21
GWC2_Ignavibacteria_rel_36_12_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(25160..26413)
DNA (1254bp) protein (418aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XR13_SORCE
triple helix repeat-containing collagen
Tax=GWC2_Ignavibacteria_rel_36_12_curated
berkeley_reactor_200306_planktonic_scaffold_158606_22
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26583..28514)
DNA (1932bp) protein (644aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI000303E8F1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM35405.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
berkeley_reactor_200306_planktonic_scaffold_158606_23

Not on your lists

28937..29500
DNA (564bp) protein (188aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B2A0B1_OPITP
Marine sediment metagenome DNA, contig: S01H1_L07814 {ECO:0000313|EMBL:GAF77468.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
ECF subfamily RNA polymerase sigma-24 factor
berkeley_reactor_200306_planktonic_scaffold_158606_24
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

29567..33379
DNA (3813bp) protein (1271aa)
Serine/threonine protein kinase with TPR repeats n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B2A0B2_OPITP
TPR repeat-containing serine/threonine protein kinase
Serine/threonine protein kinase with TPR repeats {ECO:0000313|EMBL:ACB77448.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_158606_25
unknown

Not on your lists

comp(33715..33966)
DNA (252bp) protein (84aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_158606_26
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33963..38777)
DNA (4815bp) protein (1605aa)
Helicase, C-terminal n=1 Tax=mine drainage metagenome RepID=E6QW78_9ZZZZ
Helicase, C-terminal, partial {ECO:0000313|EMBL:BAO29738.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
helicase, C-terminal, partial
berkeley_reactor_200306_planktonic_scaffold_158606_27
unknown

Not on your lists

comp(38789..39058)
DNA (270bp) protein (90aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_158606_28
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

comp(39095..39436)
DNA (342bp) protein (114aa)
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
berkeley_reactor_200306_planktonic_scaffold_158606_29
unknown

Not on your lists

comp(39450..39620)
DNA (171bp) protein (57aa)

This feature has no annotations

Displaying items 1-30 of 200 in total

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