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berkeley_reactor_200306_planktonic_scaffold_158606

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Displaying items 61-90 of 200 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_158606_60
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(73394..73876)
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00035CBE14
membrane protein
Membrane protein {ECO:0000313|EMBL:AGB70407.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
berkeley_reactor_200306_planktonic_scaffold_158606_61
Candidatus Kuenenia stuttgartiensis, Candidatus Kuenenia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(73986..77051)
DNA (3066bp) protein (1022aa)
Similar to multidrug efflux transporter AcrB n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q629_9BACT
Similar to multidrug efflux transporter AcrB {ECO:0000313|EMBL:CAJ73023.1}; TaxID=174633 species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Kuenenia.;" source="Candidatus Kuenenia stuttgartiensis.;"
cusA; Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA
berkeley_reactor_200306_planktonic_scaffold_158606_62
Candidatus Scalindua brodae, Candidatus Scalindua, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(77048..78109)
DNA (1062bp) protein (354aa)
Similar to AcrA family multidrug efflux protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q628_9BACT
AcrA family multidrug efflux protein {ECO:0000313|EMBL:KHE91219.1}; TaxID=237368 species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Scalindua.;" source="Candidatus Scalindua brodae.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_158606_63
Candidatus Kuenenia stuttgartiensis, Candidatus Kuenenia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(78136..79548)
DNA (1413bp) protein (471aa)
hypothetical protein n=1 Tax=Geopsychrobacter electrodiphilus RepID=UPI0003603929
Hypothetical outermembrane protein {ECO:0000313|EMBL:CAJ73025.1}; TaxID=174633 species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Kuenenia.;" source="Candidatus Kuenenia stuttgartiensis.;"
Outer membrane efflux protein
berkeley_reactor_200306_planktonic_scaffold_158606_64
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(79551..80960)
DNA (1410bp) protein (470aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7H5_9BACT
signal transduction histidine kinase
berkeley_reactor_200306_planktonic_scaffold_158606_65
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(80957..81631)
DNA (675bp) protein (225aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7H6_9BACT
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:EDY17593.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
DNA-binding response regulator
berkeley_reactor_200306_planktonic_scaffold_158606_66
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(81771..82271)
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D6K4_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA24862.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_158606_67
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

82537..83538
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DBB0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY16298.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_158606_68
Blastopirellula marina, Blastopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(83610..86162)
DNA (2553bp) protein (851aa)
copper-exporting ATPase n=1 Tax=Verrucomicrobium spinosum RepID=UPI000174438D
Copper-transporting ATPase {ECO:0000313|EMBL:EAQ82104.1}; TaxID=314230 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Blastopirellula.;" source="Blastopirellula marina DSM 3645.;"
heavy metal translocating P-type ATPase
berkeley_reactor_200306_planktonic_scaffold_158606_69
BJP_IG2069_Chloroflexi_70_12, Chloroflexi, Bacteria

Not on your lists

comp(86166..86711)
DNA (546bp) protein (182aa)
RNA polymerase sigma-70 factor, ECF subfamily protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI000174438E
ECF family RNA polymerase sigma factor
Tax=BJP_IG2069_Chloroflexi_70_12
berkeley_reactor_200306_planktonic_scaffold_158606_70
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(86852..87226)
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Rubritalea marina RepID=UPI00035F319D
hypothetical protein
Tax=GWF2_Verrucomicrobia_62_7_curated
berkeley_reactor_200306_planktonic_scaffold_158606_71
Phycisphaera mikurensis, Phycisphaera, Phycisphaerales, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(87293..87751)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Phycisphaera mikurensis (strain NBRC 102666 / KCTC 22515 / FYK2301M01) RepID=I0IJF7_PHYMF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM05395.1}; TaxID=1142394 species="Bacteria; Planctomycetes; Phycisphaerae; Phycisphaerales; Phycisphaeraceae; Phycisphaera.;" source="Phycisphaera mikurensis (strain NBRC 102666 / KCTC 22515 /; FYK2301M01).;"
berkeley_reactor_200306_planktonic_scaffold_158606_72
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(87907..88647)
DNA (741bp) protein (247aa)
Copper resistance B n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SV09_CAUSK
copper resistance B
Copper resistance B {ECO:0000313|EMBL:ABZ71478.1}; Flags: Precursor;; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
berkeley_reactor_200306_planktonic_scaffold_158606_73
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(88663..90573)
DNA (1911bp) protein (637aa)
Copper resistance protein A n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F1R6_ACIC5
copA1; copper resistance protein A
Copper resistance protein A {ECO:0000313|EMBL:ACO33430.1}; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 /; NBRC 15755 / NCIMB 13165 / 161).;"
berkeley_reactor_200306_planktonic_scaffold_158606_74
unknown

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comp(90586..90783)
DNA (198bp) protein (66aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_158606_75
GWC2_Deltaproteobacteria_65_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(90797..91156)
DNA (360bp) protein (120aa)
Nitrogen regulatory protein P-II id=4041017 bin=GWC2_Proteo_65_14_Ab886 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
nitrogen regulatory protein P-II
Tax=GWC2_Deltaproteobacteria_65_14_curated
berkeley_reactor_200306_planktonic_scaffold_158606_76
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(91153..91575)
DNA (423bp) protein (141aa)
Response regulator receiver protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IVY0_9BACT
chemotaxis protein CheY
Chemotaxis protein CheY {ECO:0000313|EMBL:AHF91816.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_158606_77
unknown

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comp(91572..91775)
DNA (204bp) protein (68aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_158606_78
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(91772..92056)
DNA (285bp) protein (95aa)
Glycoside hydrolase family 13 domain protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZPX5_OPITP
family 1 glycoside hydrolase
Tax=GWF2_Verrucomicrobia_62_7_curated
berkeley_reactor_200306_planktonic_scaffold_158606_79
Legionella pneumophila, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(92181..92648)
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Legionella pneumophila (strain Corby) RepID=A5IFM2_LEGPC
cecA; Chemiosmotic efflux system C protein A
Uncharacterized protein {ECO:0000313|EMBL:ADG24375.1}; TaxID=423212 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.;" source="Legionella pneumophila serogroup 1 (strain 2300/99 Alcoy).;"
berkeley_reactor_200306_planktonic_scaffold_158606_80
Legionella pneumophila, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(92669..95857)
DNA (3189bp) protein (1063aa)
transporter n=1 Tax=Fluoribacter dumoffii RepID=UPI0002E21B31
Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA
Chemiosmotic efflux system protein A (CzcA) {ECO:0000313|EMBL:ADG24374.1}; TaxID=423212 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.;" source="Legionella pneumophila serogroup 1 (strain 2300/99 Alcoy).;"
berkeley_reactor_200306_planktonic_scaffold_158606_81
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(95879..96832)
DNA (954bp) protein (318aa)
Chemiosmotic efflux system C protein B n=1 Tax=Legionella pneumophila subsp. pneumophila RepID=I7I317_LEGPN
cecB; Chemiosmotic efflux system C protein B
Tax=CSP1_2_Dadabacteria
berkeley_reactor_200306_planktonic_scaffold_158606_82
Legionella hackeliae, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(96845..98092)
DNA (1248bp) protein (416aa)
hypothetical protein n=1 Tax=Legionella tunisiensis RepID=UPI00030F73C3
cecC; Chemiosmotic efflux system C protein C
Chemiosmotic efflux system C protein C {ECO:0000313|EMBL:CEK09654.1}; TaxID=449 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.;" source="Legionella hackeliae.;"
berkeley_reactor_200306_planktonic_scaffold_158606_83
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(98870..99712)
DNA (843bp) protein (281aa)
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
Prolipoprotein diacylglyceryl transferase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZU76_OPITP
prolipoprotein diacylglyceryl transferase
berkeley_reactor_200306_planktonic_scaffold_158606_84
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(99782..103054)
DNA (3273bp) protein (1091aa)
Heavy metal efflux pump, CzcA family id=3377417 bin=GWF2_Lentisphaerae_50_93 species=Opitutus terrae genus=Opitutus taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
CzcA family heavy metal efflux protein
Tax=GWF2_Lentisphaerae_50_93_curated
berkeley_reactor_200306_planktonic_scaffold_158606_85
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(103067..104929)
DNA (1863bp) protein (621aa)
Efflux transporter, RND family, MFP subunit id=3377413 bin=GWF2_Lentisphaerae_50_93 species=Opitutus terrae genus=Opitutus taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
RND family efflux transporter MFP subunit
Tax=GWF2_Lentisphaerae_50_93_curated
berkeley_reactor_200306_planktonic_scaffold_158606_86
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(104926..106302)
DNA (1377bp) protein (459aa)
Outer membrane efflux protein id=3377409 bin=GWF2_Lentisphaerae_50_93 species=Leptospira sp. B5-022 genus=Leptospira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
outer membrane efflux protein
Tax=GWF2_Verrucomicrobia_62_7_curated
berkeley_reactor_200306_planktonic_scaffold_158606_87
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(106903..107307)
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036A4FB3
Predicted metal transporter {ECO:0000313|EMBL:CCG91407.1}; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
metal transporter
berkeley_reactor_200306_planktonic_scaffold_158606_88
unknown

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comp(107595..108065)
DNA (471bp) protein (157aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_158606_89

Not on your lists

comp(108354..109268)
DNA (915bp) protein (305aa)
Putative uncharacterized protein n=1 Tax=Paracoccus marcusii RepID=D7PW30_9RHOB
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48972.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
transposase
Displaying items 61-90 of 200 in total

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