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berkeley_reactor_200306_planktonic_scaffold_158606

Search features with annotation key words

Displaying items 91-120 of 200 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_158606_90

Not on your lists

comp(109262..109528)
DNA (267bp) protein (89aa)
Transposase n=1 Tax=Burkholderia dolosa AUO158 RepID=A2WFL2_9BURK
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48971.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
transposase family protein
berkeley_reactor_200306_planktonic_scaffold_158606_91
uncultured Acidobacteria bacterium A11, Acidobacteria, Bacteria

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109602..110423
DNA (822bp) protein (274aa)
Putative uncharacterized protein n=1 Tax=uncultured Acidobacteria bacterium A11 RepID=F8TTJ6_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:AEH26507.1}; TaxID=1036854 species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium A11.;"
berkeley_reactor_200306_planktonic_scaffold_158606_92
unknown

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110583..110927
DNA (345bp) protein (115aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_158606_93
unknown

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111063..111476
DNA (414bp) protein (138aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_158606_94
unknown

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111574..111876
DNA (303bp) protein (101aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_158606_95
uncultured Acidobacteria bacterium A11, Acidobacteria, Bacteria

Not on your lists

111879..112370
DNA (492bp) protein (164aa)
Putative uncharacterized protein n=1 Tax=uncultured Acidobacteria bacterium A11 RepID=F8TTJ7_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:AEH26508.1}; TaxID=1036854 species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium A11.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_158606_96
uncultured Acidobacteria bacterium A11, Acidobacteria, Bacteria

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112354..112944
DNA (591bp) protein (197aa)
RNA polymerase sigma factor n=1 Tax=uncultured Acidobacteria bacterium A11 RepID=F8TTK1_9BACT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1036854 species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium A11.;"
RNA polymerase subunit sigma-24
berkeley_reactor_200306_planktonic_scaffold_158606_97
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

comp(113057..114244)
DNA (1188bp) protein (396aa)
ATPase AAA
ATPase AAA {ECO:0000313|EMBL:AKC83505.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
ATPase-like protein id=14624320 bin=bin5_DeltaP species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin5_DeltaP organism_group=Deltaproteobacteria
berkeley_reactor_200306_planktonic_scaffold_158606_98
RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

114702..115526
DNA (825bp) protein (275aa)
NERD domain protein n=1 Tax=Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) RepID=C7LSN7_DESBD
NERD domain-containing protein
Tax=RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated
berkeley_reactor_200306_planktonic_scaffold_158606_99
unknown

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comp(115576..116163)
DNA (588bp) protein (196aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_158606_100
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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comp(116239..118188)
DNA (1950bp) protein (650aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZQ30_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB77749.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_158606_101
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(118185..118760)
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZQ29_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB77748.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_158606_102
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(118757..120016)
DNA (1260bp) protein (420aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZQ28_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB77747.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_158606_103
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(120038..120592)
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI000372DA3D
Uncharacterized protein {ECO:0000313|EMBL:CDH47225.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_158606_104
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(120599..123016)
DNA (2418bp) protein (806aa)
Helicase UvrD n=1 Tax=Pseudomonas chloritidismutans AW-1 RepID=V4QHA0_PSECO
Helicase UvrD {ECO:0000313|EMBL:EQL43543.1}; TaxID=1350465 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA03.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_158606_105
Candidatus Brocadia sinica, Candidatus Brocadia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(123056..125596)
DNA (2541bp) protein (847aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037BC563
Uncharacterized protein {ECO:0000313|EMBL:GAN32862.1}; TaxID=1197129 species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Brocadia.;" source="Candidatus Brocadia sinica JPN1.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_158606_106
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(125794..129195)
DNA (3402bp) protein (1134aa)
hypothetical protein n=1 Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI00036F00B0
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
berkeley_reactor_200306_planktonic_scaffold_158606_107
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(129199..132681)
DNA (3483bp) protein (1161aa)
hypothetical protein n=1 Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI00035F8375
Helicase {ECO:0000313|EMBL:ESZ11301.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
helicase domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_158606_108
unknown

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comp(132929..133339)
DNA (411bp) protein (137aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_158606_109
unknown

Not on your lists

comp(133817..134230)
DNA (414bp) protein (138aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_158606_110
unknown

Not on your lists

comp(134367..134579)
DNA (213bp) protein (71aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_158606_111
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(135517..136977)
DNA (1461bp) protein (487aa)
Putative uncharacterized protein id=3377422 bin=GWF2_Lentisphaerae_50_93 species=Opitutaceae bacterium TAV5 genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
hypothetical protein
Tax=GWF2_Lentisphaerae_50_93_curated
berkeley_reactor_200306_planktonic_scaffold_158606_112
unknown

Not on your lists

comp(136974..137309)
DNA (336bp) protein (112aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_158606_113
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(137306..138007)
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6UF12_9RHOB
conjugal transfer protein TraL
Tax=CG_Rhodof_04
berkeley_reactor_200306_planktonic_scaffold_158606_114
unknown

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comp(138004..138693)
DNA (690bp) protein (230aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_158606_115
unknown

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comp(138749..139003)
DNA (255bp) protein (85aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_158606_116
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

139151..141958
DNA (2808bp) protein (936aa)
Conjugative relaxase domain protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZY28_OPITP
conjugative relaxase domain-containing protein
Conjugative relaxase domain protein {ECO:0000313|EMBL:ACB75227.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_158606_117
unknown

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141924..142280
DNA (357bp) protein (119aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_158606_118
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

142473..142949
DNA (477bp) protein (159aa)
MerR family transcriptional regulator id=12556474 bin=CNBR_ACIDO species=Acidimicrobium ferrooxidans genus=Acidimicrobium taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
transcription regulator MerR DNA binding protein
Transcription regulator MerR DNA binding protein {ECO:0000313|EMBL:ADE14790.1}; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
berkeley_reactor_200306_planktonic_scaffold_158606_119
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

142990..143622
DNA (633bp) protein (211aa)
Heavy metal transport/detoxification protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZPI6_OPITP
heavy metal transport/detoxification protein
Heavy metal transport/detoxification protein {ECO:0000313|EMBL:ACB74505.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
Displaying items 91-120 of 200 in total

View Taxonomy