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berkeley_reactor_200306_planktonic_scaffold_158606

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Displaying items 151-180 of 200 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_158606_149
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(195985..197532)
DNA (1548bp) protein (516aa)
Drug resistance transporter, EmrB/QacA subfamily n=1 Tax=Desulfovibrio sp. X2 RepID=S7TKG9_9DELT
Drug resistance transporter, EmrB/QacA subfamily {ECO:0000313|EMBL:CDM65472.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
EmrB/QacA subfamily drug resistance transporter
berkeley_reactor_200306_planktonic_scaffold_158606_150
Desulfovibrio fructosivorans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(197627..198805)
DNA (1179bp) protein (393aa)
Secretion protein HlyD family protein n=1 Tax=Desulfovibrio fructosivorans JJ RepID=E1JYJ6_DESFR
Secretion protein HlyD family protein {ECO:0000313|EMBL:EFL50580.1}; TaxID=596151 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio fructosivorans JJ.;"
secretion protein HlyD family protein
berkeley_reactor_200306_planktonic_scaffold_158606_151
unknown

Not on your lists

comp(198846..199112)
DNA (267bp) protein (89aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_158606_152
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(199109..199504)
DNA (396bp) protein (132aa)
trx; thioredoxin (EC:1.8.1.8)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00037B34FA
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
berkeley_reactor_200306_planktonic_scaffold_158606_153
RIFOXYC12_FULL_Lentisphaerae_60_16_curated, Lentisphaerae, Bacteria

Not on your lists

199696..201327
DNA (1632bp) protein (544aa)
Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XF66_9BACT
hydrogenase-4 transcriptional activator
Tax=RIFOXYC12_FULL_Lentisphaerae_60_16_curated
berkeley_reactor_200306_planktonic_scaffold_158606_154
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

201589..202506
DNA (918bp) protein (306aa)
Transcriptional regulator, AraC family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJS0_9BACT
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EEF59946.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_158606_155
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

202603..203598
DNA (996bp) protein (332aa)
Aldo/keto reductase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJS3_9BACT
Aldo/keto reductase {ECO:0000313|EMBL:EEF59949.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
aldo/keto reductase
berkeley_reactor_200306_planktonic_scaffold_158606_156
Mastigocladus laminosus, Mastigocladus, Stigonematales, Cyanobacteria, Bacteria

Not on your lists

203655..204224
DNA (570bp) protein (190aa)
hypothetical protein n=1 Tax=Fischerella muscicola RepID=UPI0002F44FDD
NADPH-dependent FMN reductase {ECO:0000313|EMBL:KIY10950.1}; TaxID=1594576 species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;"
multimeric flavodoxin WrbA
berkeley_reactor_200306_planktonic_scaffold_158606_157
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

204233..204955
DNA (723bp) protein (241aa)
4-carboxymuconolactone decarboxylase (EC:4.1.1.44)
4-carboxymuconolactone decarboxylase n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0A9X3_COLFT
4-carboxymuconolactone decarboxylase {ECO:0000313|EMBL:KEA04399.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
berkeley_reactor_200306_planktonic_scaffold_158606_158
Xanthomonas albilineans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(205066..206454)
DNA (1389bp) protein (463aa)
Hypothetical extracellular endoglucanase (Cellulase) protein n=1 Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2UCZ6_XANAP
extracellular endoglucanase precursor
Hypothetical extracellular endoglucanase (Cellulase) protein {ECO:0000313|EMBL:CBA15383.1}; TaxID=380358 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas albilineans (strain GPE PC73 / CFBP 7063).;"
berkeley_reactor_200306_planktonic_scaffold_158606_159
Hymenobacter swuensis, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(206473..208632)
DNA (2160bp) protein (720aa)
beta-glucosidase-like glycosyl hydrolase (EC:3.2.1.21)
Beta-glucosidase-like glycosyl hydrolase {ECO:0000313|EMBL:AHJ97043.1}; EC=3.2.1.21 {ECO:0000313|EMBL:AHJ97043.1};; TaxID=1227739 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter swuensis DY53.;"
Beta-glucosidase-like glycosyl hydrolase n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KVR4_SOLCM
berkeley_reactor_200306_planktonic_scaffold_158606_160
RIFOXYD1_FULL_Bdellovibrionales_55_31_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

208849..210915
DNA (2067bp) protein (689aa)
Trehalase, Ca-binding neutral cytoplasmic id=4124439 bin=GWF2_Planctomycetes_42_9 species=Psychroflexus torquis genus=Psychroflexus taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
trehalase, Ca-binding neutral cytoplasmic
Tax=RIFOXYD1_FULL_Bdellovibrionales_55_31_curated
berkeley_reactor_200306_planktonic_scaffold_158606_161
Caldicellulosiruptor saccharolyticus, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(211027..212358)
DNA (1332bp) protein (444aa)
Glycosyl hydrolase, family 88 n=1 Tax=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) RepID=A4XN13_CALS8
glycosyl hydrolase, family 88
Glycosyl hydrolase, family 88 {ECO:0000313|EMBL:ABP68298.1}; TaxID=351627 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 /; Tp8T 6331).;"
berkeley_reactor_200306_planktonic_scaffold_158606_162
Dickeya solani, Dickeya, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(212384..216127)
DNA (3744bp) protein (1248aa)
Cellulose 1,4-beta-cellobiosidase n=1 Tax=Dickeya sp. D s0432-1 RepID=U6ZL20_9ENTR
Cellulose 1,4-beta-cellobiosidase {ECO:0000313|EMBL:ERO59155.1}; TaxID=1231725 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Dickeya.;" source="Dickeya solani D s0432-1.;"
cellulose 1,4-beta-cellobiosidase
berkeley_reactor_200306_planktonic_scaffold_158606_163
Streptomyces bingchenggensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(216211..216774)
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Streptomyces bingchenggensis (strain BCW-1) RepID=D7CBL6_STRBB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADI12893.1}; TaxID=749414 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces bingchenggensis (strain BCW-1).;"
berkeley_reactor_200306_planktonic_scaffold_158606_164
Ricinus communis, Ricinus, Malpighiales, rosids, Streptophyta, Viridiplantae

Not on your lists

comp(216771..218591)
DNA (1821bp) protein (607aa)
Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TDA6_RICCO
Putative uncharacterized protein {ECO:0000313|EMBL:EEF26158.1}; TaxID=3988 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus.;" source="Ricinus communis (Castor bean).;"
cellulose 1,4-beta-cellobiosidase
berkeley_reactor_200306_planktonic_scaffold_158606_165
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(218628..219638)
DNA (1011bp) protein (337aa)
Glycosyl hydrolase family 43 protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NKS6_9SPHI
ricin B lectin
Ricin B lectin {ECO:0000313|EMBL:AHF14594.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_planktonic_scaffold_158606_166
Bacteroides cellulosilyticus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(219643..221313)
DNA (1671bp) protein (557aa)
Uncharacterized protein n=1 Tax=Bacteroides cellulosilyticus DSM 14838 RepID=E2NES5_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EEF89574.1}; TaxID=537012 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides cellulosilyticus DSM 14838.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_158606_167
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(221365..222165)
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQF9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57884.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_158606_168
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(222252..225683)
DNA (3432bp) protein (1144aa)
Carbohydrate binding family 6 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAT4_9BACT
Carbohydrate binding family 6 {ECO:0000313|EMBL:EEF63119.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
cell wall surface anchor family protein
berkeley_reactor_200306_planktonic_scaffold_158606_169
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

226088..227143
DNA (1056bp) protein (352aa)
Transcriptional regulator, LacI family n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IUF5_9BACT
LacI family transcriptional regulator
LacI family transcriptional regulator {ECO:0000313|EMBL:AHF91243.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_158606_170
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(227343..228512)
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGA8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61270.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_158606_171
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(228509..230401)
DNA (1893bp) protein (631aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGA9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61271.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ABC transporter
berkeley_reactor_200306_planktonic_scaffold_158606_172
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(230417..231169)
DNA (753bp) protein (251aa)
ABC transporter, permease protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGB0_9BACT
ABC transporter, permease protein {ECO:0000313|EMBL:EEF61272.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ABC transporter permease
berkeley_reactor_200306_planktonic_scaffold_158606_173
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(231200..232141)
DNA (942bp) protein (314aa)
ABC transporter related-protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGB1_9BACT
ABC transporter related-protein {ECO:0000313|EMBL:EEF61273.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ABC transporter
berkeley_reactor_200306_planktonic_scaffold_158606_174
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

232548..233156
DNA (609bp) protein (203aa)
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Superoxide dismutase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMA4_9BACT
superoxide dismutase
berkeley_reactor_200306_planktonic_scaffold_158606_175
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(233303..233665)
DNA (363bp) protein (121aa)
Aspartate 1-decarboxylase {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097809}; EC=4.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097718};; Aspartate alpha-decarboxylase {ECO:0000256|HAMAP-Rule:MF_00446}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
panD; aspartate 1-decarboxylase (EC:4.1.1.11)
Aspartate 1-decarboxylase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CWW6_9BACT
berkeley_reactor_200306_planktonic_scaffold_158606_176
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(233728..234297)
DNA (570bp) protein (190aa)
anthranilate synthase, component II (EC:4.1.3.27)
Glutamine amidotransferase of anthranilate synthase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XL51_9BACT
Glutamine amidotransferase of anthranilate synthase {ECO:0000313|EMBL:EEF59402.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_158606_177
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(234341..235243)
DNA (903bp) protein (301aa)
LysR family transcriptional regulator n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017452B7
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EEF62796.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
alsR; LysR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_158606_178
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

235382..238564
DNA (3183bp) protein (1061aa)
Acriflavin resistance protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBB0_9BACT
Acriflavin resistance protein {ECO:0000313|EMBL:EEF62795.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
cation/multidrug efflux pump
Displaying items 151-180 of 200 in total

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