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berkeley_reactor_200306_planktonic_scaffold_158606

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Displaying items 181-200 of 200 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_158606_179
Desulfomonile tiedjei, Desulfomonile, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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238561..239727
DNA (1167bp) protein (389aa)
RND family efflux transporter, MFP subunit n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C5D0_DESTA
RND family efflux transporter, MFP subunit
RND family efflux transporter, MFP subunit {ECO:0000313|EMBL:AFM24771.1}; TaxID=706587 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Desulfomonile.;" source="Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1).;"
berkeley_reactor_200306_planktonic_scaffold_158606_180
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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239724..241184
DNA (1461bp) protein (487aa)
RND efflux system, outer membrane lipoprotein, NodT family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBA8_9BACT
RND efflux system, outer membrane lipoprotein, NodT family {ECO:0000313|EMBL:EEF62793.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
RND efflux system outer membrane lipoprotein
berkeley_reactor_200306_planktonic_scaffold_158606_181
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(241191..241874)
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIK5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60268.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_158606_182
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(241940..244216)
DNA (2277bp) protein (759aa)
RNA binding S1 domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DC92_9BACT
RNA binding S1 domain protein {ECO:0000313|EMBL:EDY15922.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
transcription accessory protein
berkeley_reactor_200306_planktonic_scaffold_158606_183
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(244319..245398)
DNA (1080bp) protein (360aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
3-dehydroquinate synthase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XL61_9BACT
aroB; 3-dehydroquinate synthase
berkeley_reactor_200306_planktonic_scaffold_158606_184
unknown

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comp(245433..245525)
DNA (93bp) protein (31aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_158606_185
unknown

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comp(245542..245865)
DNA (324bp) protein (108aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_158606_186
unknown

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comp(245862..246128)
DNA (267bp) protein (89aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_158606_187
Spirochaeta smaragdinae, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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comp(246256..246942)
DNA (687bp) protein (229aa)
LuxR family transcriptional regulator n=1 Tax=Spirochaeta bajacaliforniensis RepID=UPI000378E0E9
LuxR family transcriptional regulator
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:ADK80951.1}; TaxID=573413 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228).;"
berkeley_reactor_200306_planktonic_scaffold_158606_188
RBG_16_Gamma2_64_11_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(246917..249007)
DNA (2091bp) protein (697aa)
PAS domain S-box n=1 Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3Y6V9_THIV6
PAS domain-containing protein
Tax=RBG_16_Gamma2_64_11_curated
berkeley_reactor_200306_planktonic_scaffold_158606_189
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(249166..250533)
DNA (1368bp) protein (456aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
tRNA modification GTPase MnmE n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIZ6_9BACT
tRNA modification GTPase mnmE
berkeley_reactor_200306_planktonic_scaffold_158606_190
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(250607..250864)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIZ5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60222.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_158606_191
unknown

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comp(250861..251550)
DNA (690bp) protein (230aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_158606_192
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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251618..251899
DNA (282bp) protein (94aa)
Septum formation initiator n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIZ2_9BACT
Septum formation initiator {ECO:0000313|EMBL:EEF60219.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ftsB; cell division protein FtsB
berkeley_reactor_200306_planktonic_scaffold_158606_193
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(252148..252708)
DNA (561bp) protein (187aa)
Ribosome-recycling factor n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIZ1_9BACT
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ribosome-recycling factor
berkeley_reactor_200306_planktonic_scaffold_158606_194
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

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comp(252949..254649)
DNA (1701bp) protein (567aa)
Cell surface protein id=4613965 bin=GWF2_Lentisphaerae_49_21 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
cell surface protein
Tax=GWF2_Lentisphaerae_49_21_curated
berkeley_reactor_200306_planktonic_scaffold_158606_195
unknown

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comp(254646..255230)
DNA (585bp) protein (195aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_158606_196
unknown

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comp(255235..256026)
DNA (792bp) protein (264aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_158606_197
unknown

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comp(256067..256483)
DNA (417bp) protein (139aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_158606_198
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(256493..257935)
DNA (1443bp) protein (481aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLF7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59360.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Displaying items 181-200 of 200 in total

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