ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_158606_180

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: 239724..241184

Top 3 Functional Annotations

Value Algorithm Source
RND efflux system, outer membrane lipoprotein, NodT family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBA8_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 55.0
  • Coverage: 471.0
  • Bit_score: 488
  • Evalue 4.40e-135
RND efflux system, outer membrane lipoprotein, NodT family {ECO:0000313|EMBL:EEF62793.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 55.0
  • Coverage: 471.0
  • Bit_score: 488
  • Evalue 6.10e-135
RND efflux system outer membrane lipoprotein similarity KEGG
DB: KEGG
  • Identity: 47.6
  • Coverage: 485.0
  • Bit_score: 389
  • Evalue 1.00e-105

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1461
ATGAAACGTCTCGCATTCATCGGCACGCTTGCCCTGATCGCCGGCCTGGCCGGTTGCGCGGTTGGCCCGGATTATCAACGTCCGCCGGCGACGCCGAGTCAACCCGCCGCGCCCGCCTTCAGTGATGGCAGCACTAATCGAGTGTTATGGAAAGTTGCCGAACCCGCCGCCGGCGAATCGCGCGGCGCATGGTGGCAAATGTTTGGCGACGCCGAACTGAACCGCCTGGAATCGCTGGCCGCGACCAACAACCAAGACCTCGTTGCCGCCGTCGCGCGCCTCGAACAATCGCGCGCCCAGGTGGCAACGGCGCGTTCGGAATTTTTTCCGCAACTGACCGCCGGCGGCGCGCCGAATGGCGACTTCAACCGCCAGCGCACCAGTTATCATCAGCCCAATCAAGGCCAGTCAGCGGATGTCTCGCACACTTACAACACGTTCACCGCGCCGTTGTATCTGGGCTGGGAAGTGGATTTGTGGGGCCGCGTGCGCCGGCTTTCCGAAGGCGCGCACGCGCGTTTTTCCGCCGCGTCCGATGATGTGGAATCCGCGCGTCTGGGCCTGGCGGCGGAAGTGGCCAGCGATTATTTTTTGTATCGCGCGTTGAACCGCGAATTTTCCGTGCTCACGAACACCGTTGCGACATTTCGTCGTTCGTTGGAACTGACACAAAACCGGCGGCGCGGCGGCATTGCCACCGATTTGGATGTGGCCCAGGCGGAAACGCAATTGCGCAGCGCCGAAGCTCAAATCCCCGCGATCAAATTGAACCTGGCCCAGACGCAAAACGCCATCGCCACGCTTTGCGGCGAACCGGCAATGATCTTCACCATCACGCCCGCGGAAAAGTTGCCGGATCAAACACCGTCCATTCCGTCCATTCTGCCGGCTGAATTGCTGGAGCATCGGCCCGACATCGCGGCGGCAGAACGTCGCATGGCGGCCGCCAATGCGGACATCGGCGTGGCGAAAGCGGCGTTTTTTCCCGCGATCAAATTCAACGGCCTCGCCGGTTTCCAATCCGTGGACGCCAATACGTGGTTCGACTGGCCCAGCCGGTTTTGGTCCGTCGGTCCCAGCGTTGAGTTGCCGCTGTTCACGGGCGGATTGAATCGCGCGAAACTGGCCGAGACCAAGGCGGCTTACGAGGAAAACGTCGCCCATTATCGGCAGACCGTGCTCAACGCCTTCGGTGAAGTGGAAAACGCGCTGGCCGCCCAGCGATTGCTGGCGGATGAATGGAACGCGGAAAATGCCGCGCTCGCCGCTGCGCGCCGTTCGCAAGCCATCGCCGTCAATCGTTACAAAGCCGGTTTGGTGACGTATCTCGACGTGGCCGCCGCGCAGGCAGTGACGCTCGCGCATGAACGCACCGTTGTGCAATTGCAAGGCTCACGCCTAACGGCCACCGTCAATCTGGTCAAAGCGCTCGGCTGCGGTTGGACCGCGCCGAAATCCTGA
PROTEIN sequence
Length: 487
MKRLAFIGTLALIAGLAGCAVGPDYQRPPATPSQPAAPAFSDGSTNRVLWKVAEPAAGESRGAWWQMFGDAELNRLESLAATNNQDLVAAVARLEQSRAQVATARSEFFPQLTAGGAPNGDFNRQRTSYHQPNQGQSADVSHTYNTFTAPLYLGWEVDLWGRVRRLSEGAHARFSAASDDVESARLGLAAEVASDYFLYRALNREFSVLTNTVATFRRSLELTQNRRRGGIATDLDVAQAETQLRSAEAQIPAIKLNLAQTQNAIATLCGEPAMIFTITPAEKLPDQTPSIPSILPAELLEHRPDIAAAERRMAAANADIGVAKAAFFPAIKFNGLAGFQSVDANTWFDWPSRFWSVGPSVELPLFTGGLNRAKLAETKAAYEENVAHYRQTVLNAFGEVENALAAQRLLADEWNAENAALAAARRSQAIAVNRYKAGLVTYLDVAAAQAVTLAHERTVVQLQGSRLTATVNLVKALGCGWTAPKS*