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berkeley_reactor_200306_planktonic_scaffold_158606_14

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(17292..18071)

Top 3 Functional Annotations

Value Algorithm Source
30S ribosomal protein S2 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRC5_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 71.7
  • Coverage: 258.0
  • Bit_score: 367
  • Evalue 7.80e-99
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 71.7
  • Coverage: 258.0
  • Bit_score: 367
  • Evalue 1.10e-98
rpsB; 30S ribosomal protein S2 similarity KEGG
DB: KEGG
  • Identity: 54.6
  • Coverage: 251.0
  • Bit_score: 276
  • Evalue 3.90e-72

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 780
GTGAGCACTATTGGAGTTAAAGAACTGTTGGATGCCGGCGTCCATTTCGGACATCAGACCAAGCGCTGGAATCCCAAGATGAAGCCGTTCATTTTTGACGCGCGCAACGGCATTCACATCATTGACCTGAGCAAGACCGAGGCGCAGCTTCAGGTGGCGCTCGACTTTCTCGCCACGACCGTCCGGAAGGGCGGCAAAATTCTTTTCGTCGGCACGAAGAAACAGGCGCAGCAATGCGTCAAGGATACCGCCAAGGAAACCGGCCAGATGCACGTCACGGAACGCTGGCTCGGCGGCACGCTGACCAATTTCACCACGGTCAAAACTTCCATCAAACGCCTGAAGGAAATTGAAAAGATGGATGCGGACGGCTCCATCAACGATTACGTGAAACAGGAGCAGGCGGTGATCCGCCGCGAAGGCGCGCGCCTCCACAAGTATTTCGACGGACTCCGCGATCTGGACAAAATGCCCGGCGCCATGTTCGTCGTGGACGTGAAGCGTGAACACAACGCCGTGGCCGAAGCCAAGAAGCTCGGCATTCCGGTGGTGGCGCTGGTGGACACGAACTGCGATCCGGAAGATGCCAATTACCCGATCGCCGCCAACGATGACGCCATCCGGTCGGTCCGCCTGATTCTGGGCGCGGTTTCCCAGGCCATCACCCAGGCGCGCGCGGAATTTGAGACCAAACGTTCCCGCCGTTCCGACGAAGGGGAAACCGCCGTTTCCGCCGAGGCTCCGGCCGCCACCGAAGCGGCGGCGCCCGCCGCGGCTTGA
PROTEIN sequence
Length: 260
VSTIGVKELLDAGVHFGHQTKRWNPKMKPFIFDARNGIHIIDLSKTEAQLQVALDFLATTVRKGGKILFVGTKKQAQQCVKDTAKETGQMHVTERWLGGTLTNFTTVKTSIKRLKEIEKMDADGSINDYVKQEQAVIRREGARLHKYFDGLRDLDKMPGAMFVVDVKREHNAVAEAKKLGIPVVALVDTNCDPEDANYPIAANDDAIRSVRLILGAVSQAITQARAEFETKRSRRSDEGETAVSAEAPAATEAAAPAAA*