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berkeley_reactor_200306_planktonic_scaffold_158606_23

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: 28937..29500

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B2A0B1_OPITP similarity UNIREF
DB: UNIREF100
  • Identity: 55.6
  • Coverage: 160.0
  • Bit_score: 173
  • Evalue 1.20e-40
Marine sediment metagenome DNA, contig: S01H1_L07814 {ECO:0000313|EMBL:GAF77468.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 50.0
  • Coverage: 182.0
  • Bit_score: 177
  • Evalue 8.90e-42
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 55.6
  • Coverage: 160.0
  • Bit_score: 173
  • Evalue 3.40e-41

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Taxonomy

marine sediment metagenome

Sequences

DNA sequence
Length: 564
ATGGATGGGGAAACATCTGCGGTTCACTTTCCTGAAGCCGGCAACGGGGAAGACGCGCCGGATCTGTTTGAATCGGTTTACAAAGACCTCCGGCGGGTGGCGGCGCAGATGATCCGCCACAACGGCGACGCCCACACATTGCAAGCCACCGCCCTGGTGCATGAAGCGTTTCTACGGTTTAACCGCTCGAAGCCCCAAGCTTGGGAAAACCAGTGTCACTTCTTTTCCGCCGCTGCGGAAGCCATGCGGCGCATCCTGATTGAACATGCCCGGCGCAAGCACGCGCTGCGGCGTGGAGCGGGGTTCCGGCCGGTCAACCTGGACGGTATTCAGGTGGCGGAAGAGGCGCCTTCGGAAGTGTTGCTCGCCGTGGACGAGGCGCTCGAAAAACTCGCCCGCGCGGACCCGTTGAAGGCGGAATTGGTCAAGCTGCGTTTTTTTGCCGGTTGCACGGTCACCGAGGTGGCTTCGCTCATGGACATGGGCGAACGAACCGTCAAATGGCACTGGGCCTTTGCCCGCGCCTGGCTGATCGAGGAGATGACGGCAGGTAAGTCAAACTGA
PROTEIN sequence
Length: 188
MDGETSAVHFPEAGNGEDAPDLFESVYKDLRRVAAQMIRHNGDAHTLQATALVHEAFLRFNRSKPQAWENQCHFFSAAAEAMRRILIEHARRKHALRRGAGFRPVNLDGIQVAEEAPSEVLLAVDEALEKLARADPLKAELVKLRFFAGCTVTEVASLMDMGERTVKWHWAFARAWLIEEMTAGKSN*