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berkeley_reactor_200306_planktonic_scaffold_190120_37

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(46760..47866)

Top 3 Functional Annotations

Value Algorithm Source
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 79.8
  • Coverage: 372.0
  • Bit_score: 581
  • Evalue 5.30e-163
3-isopropylmalate dehydrogenase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLK8_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 79.8
  • Coverage: 372.0
  • Bit_score: 581
  • Evalue 3.80e-163
3-isopropylmalate dehydrogenase similarity KEGG
DB: KEGG
  • Identity: 59.5
  • Coverage: 368.0
  • Bit_score: 420
  • Evalue 3.10e-115

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1107
ATGAAAACGTTCAATATTACAGCCCTCGCCGGCGACGGCATCGGTCCTGAAGTCATGCGCGAAGCCATCAAGGTGCTCCGCGCCGCCGAAAAAAAATTCGGTTTTCAACTCCACCTCACTGAAGCCGCGGTCGGCTGGGCGGGCATTGACGCCGCCGGCAAGGCACTGCCGGACGACACGCTCGCCCTGTGTAAAAAATCCGACTCCATCCTGTTCGGTTCCGTCGGTTTGCCGGACCGGGATCCGACCATTCCCAAGGAAGAACGTCCGGAACGCGCCGCTCTGCTGCGGTTGCGCAAGGAATTCGGATTGTTCGCCAACCTGCGCCCGGTTTCCCTGCCCCAAATGTTGTCGCACGCCTGTCCGCTGGCGAAAGAGCGTCAAGGCGACGGCATTGACATTCTCGTCGTGCGCGAACTGACCGGCGGCATGTATTTCGGCCAGCCGAAGAAAACCGAGGATTTGGGCAACGGACAGCAGCGCGCGATTGACACCATGGTTTACACCACGGCGGAAATCGAGCGCATTGCCCACGTCGCCTTCAAGGCCGCGCAATTGCGCCGCAAAAAACTGACCAGCATTGACAAGGCAAACGTCCTGGAAAACGGCATTCTCTGGCGGGAAACCGTCACCCGCATTGGCAGACAGTATCCCGACGTCACGCTGGAACATCAATTCGTGGACAACGCCGCCATGCAGCTCATGCTCAAGCCCACGCAGTTTGACGTGATGTTATGCGAGAATATGTTTGGCGACATTCTCAGTGATGAAGCCGCCGCGCTGGGTGGTTCGTTGGGCATGCTGCCCAGCGCCAGTCTCGGGGCGACCAGCGGCGACCAGACGTTCGGTTTCTATGAACCCGCCGGCGGCACGGCTCCTGATATTGCCGGGAAAAATCTGGCGAATCCGATCGCGCAAATTTTGTCCGGCGCGCTCCTGTTGCGACACAGTTTCGGATTGAACGAAGCGGCCTCCGCCATTGAAGCGGCCGTGAAGAAAGCCATTGCGGCGGGCAACCGCACGGGCGACATCTTCCACGCGGGTGAAACCGGCGTGAAACGGGTTGGCACCCGCGAAATGGGCGATGCCATTGCCGCCGCGGTCTGA
PROTEIN sequence
Length: 369
MKTFNITALAGDGIGPEVMREAIKVLRAAEKKFGFQLHLTEAAVGWAGIDAAGKALPDDTLALCKKSDSILFGSVGLPDRDPTIPKEERPERAALLRLRKEFGLFANLRPVSLPQMLSHACPLAKERQGDGIDILVVRELTGGMYFGQPKKTEDLGNGQQRAIDTMVYTTAEIERIAHVAFKAAQLRRKKLTSIDKANVLENGILWRETVTRIGRQYPDVTLEHQFVDNAAMQLMLKPTQFDVMLCENMFGDILSDEAAALGGSLGMLPSASLGATSGDQTFGFYEPAGGTAPDIAGKNLANPIAQILSGALLLRHSFGLNEAASAIEAAVKKAIAAGNRTGDIFHAGETGVKRVGTREMGDAIAAAV*