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berkeley_reactor_200306_planktonic_scaffold_198771_8

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: 9775..11451

Top 3 Functional Annotations

Value Algorithm Source
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 79.1
  • Coverage: 513.0
  • Bit_score: 778
  • Evalue 3.40e-222
Transcription termination factor Rho n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPG2_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 79.1
  • Coverage: 513.0
  • Bit_score: 778
  • Evalue 2.40e-222
rho; transcriptional terminator Rho similarity KEGG
DB: KEGG
  • Identity: 69.8
  • Coverage: 414.0
  • Bit_score: 599
  • Evalue 9.80e-169

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1677
ATGCCACCAAGAGTTTCCACCAAGAAACCCACCACCCGCAAATCCAAGGCGGCGGCGGCAGCGGCGGCAACCGCCGTTGAAACGCCGGTCGCTGAAACGCCGGCCGTCGAAGCTGCGCCGAAAGAAAAGGAAAAGGAAAAAGCAGTCGTCGGGAAGCCGGTGGCCGAAAAGCCCGCCGCCGAAAAAGCCAGACCCGTCGCGGCGGAAATCGCAGCGGAAACCGAGGCGGAAGAACGCACGGTGGACAGCATCAAAGCCGCGGCCAAGGAAGATGCGCGCCGCGACGCTTCGAGCCTGGATGCGGCGCCATCGTCCGCCCAGTTGCGTCCTCCGTCCGCGCCGTTCGAGCCCTCCGCCGTGAACGAAGAGCCGCCGCGCGGCCATGACCGGCGCGGTTATCAGCGCGACAAGATCGCGGCGTCGCTGAACATCGCCAAGCTCCAGGCCATGAGCATGACGGAACTGAACGCGATGGCGAAGGAATACGGCGTGGAAAACTTCGGGACCATGCGCAAGCACGAGGTGATTTTTCACATCCTTGAACGCAACGCCCAGCGCGCCGGCGTGCTGTTTTCCGAGGGCGTGATCGAAGTGCTGCCGGAAGGCTTCGGCTTTCTGCGGTCGCAGAGTTTCAATTATCTGCCGTGTCCCGAGGACATTTACGTTTCGCCGTCGCAGATCCGCCGCTTTGATCTTCAGACCGGCAATTTGATCACCGGCCAGATTCGTCCGCCGAAGGAAAAGGAAAAGTTTTTCGCGCTGCTCAAGGTCGAAGCCGTGGATGGCGAGGACCCGGAAAAGGCGAAGGAAAAAACGCATTTCGACAACCTCACGCCGCTGTTTCCGAACAAGCGGTTCATTTTGGAAACCAAGCCGGATGAACTCAGCACGCGGGTGCTGGACTTGGTTTGTCCGATTGGCAAGGGCACGCGCGGCCTGATCGTCGCGCCGCCGCGCACGGGCAAGACGGTGATGATGCAGAAGATTGCCAACGCGGTTTTGAAGAACAATCCGGAGACATATCTTTTTATTCTGCTGATTGACGAGCGCCCCGAGGAAGTCACCGACATGGAACGCACCTGTCGTGGCGCGGAAGTCATTTCGTCCACGTTCGACGAGCCGCCGGAACGGCATGTGCAGGTCGCTGAAATGGTGATTGAAAAGGCCCGCCGCATGGTGGAGCAGAAGCGGGACGTGATGATTCTGCTGGATTCCATCACCCGTCTGGCCCGCGCCTACAACACGGTGCAGCCGCATTCCGGCAAGATTTTGTCCGGCGGCGTGGACGCCAACGCGCTGCACAAGCCGAAGCGTTTTTTTGGCGCGGCGCGCAACATCGAGGAGGGCGGTTCGCTGACTATCATGGCCACGGCGCTGGTGGACACCGGCAGCCGCATGGACGAGGTGATCTTTGAGGAATTCAAGGGCACCGGCAACATGGAGGTGCATCTGGACCGCGCGCTGGTGGACCGCCGCATTTTCCCATCCATCAACATCGAACGTTCCGGCACGCGCAAGGAAGAACTGCTGTATCACCCCGACGAGGCCAGCCGCGTGGTGGTGCTGCGCCGCGCCCTCACAGGAGTGCCGCCGGTCGAGGCGATGGAATTGATGCTGGGCAAGTTGAAGAAAACCGGCAGCAACATCGAATTCCTGCTGCAGATGGCGGTTGGTTAA
PROTEIN sequence
Length: 559
MPPRVSTKKPTTRKSKAAAAAAATAVETPVAETPAVEAAPKEKEKEKAVVGKPVAEKPAAEKARPVAAEIAAETEAEERTVDSIKAAAKEDARRDASSLDAAPSSAQLRPPSAPFEPSAVNEEPPRGHDRRGYQRDKIAASLNIAKLQAMSMTELNAMAKEYGVENFGTMRKHEVIFHILERNAQRAGVLFSEGVIEVLPEGFGFLRSQSFNYLPCPEDIYVSPSQIRRFDLQTGNLITGQIRPPKEKEKFFALLKVEAVDGEDPEKAKEKTHFDNLTPLFPNKRFILETKPDELSTRVLDLVCPIGKGTRGLIVAPPRTGKTVMMQKIANAVLKNNPETYLFILLIDERPEEVTDMERTCRGAEVISSTFDEPPERHVQVAEMVIEKARRMVEQKRDVMILLDSITRLARAYNTVQPHSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTIMATALVDTGSRMDEVIFEEFKGTGNMEVHLDRALVDRRIFPSINIERSGTRKEELLYHPDEASRVVVLRRALTGVPPVEAMELMLGKLKKTGSNIEFLLQMAVG*