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berkeley_reactor_200306_planktonic_scaffold_198771

Search features with annotation key words

Displaying items 1-30 of 297 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_198771_1
Rhodopirellula sallentina, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

403..1626
DNA (1224bp) protein (408aa)
Lipoprotein n=1 Tax=Rhodopirellula sallentina SM41 RepID=M5U6Z5_9PLAN
Lipoprotein {ECO:0000313|EMBL:EMI57195.1}; TaxID=1263870 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula sallentina SM41.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_198771_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(1773..3185)
DNA (1413bp) protein (471aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBI2_9BACT
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EEF62867.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ECF subfamily RNA polymerase sigma-24 factor
berkeley_reactor_200306_planktonic_scaffold_198771_3
unknown

Not on your lists

3466..4128
DNA (663bp) protein (221aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_198771_4
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

4192..6372
DNA (2181bp) protein (727aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Sugar-phosphate isomerase, RpiB/LacA/LacB family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPG3_9BACT
glyA; protein-tyrosine-phosphatase, ribose 5-phosphate isomerase and glycine/serine hydroxymethyltransferase
berkeley_reactor_200306_planktonic_scaffold_198771_5
unknown

Not on your lists

6469..6783
DNA (315bp) protein (105aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_198771_6
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(6780..8516)
DNA (1737bp) protein (579aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XK77_9BACT
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EEF59715.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ECF subfamily RNA polymerase sigma-24 factor
berkeley_reactor_200306_planktonic_scaffold_198771_7
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(8634..9404)
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPR2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58185.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
N-terminal cleavage protein
berkeley_reactor_200306_planktonic_scaffold_198771_8
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

9775..11451
DNA (1677bp) protein (559aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Transcription termination factor Rho n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPG2_9BACT
rho; transcriptional terminator Rho
berkeley_reactor_200306_planktonic_scaffold_198771_9
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

11571..12746
DNA (1176bp) protein (392aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI0003802C85
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
berkeley_reactor_200306_planktonic_scaffold_198771_10
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

12794..14041
DNA (1248bp) protein (416aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI000371E188
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB77676.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_198771_11
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

14038..15921
DNA (1884bp) protein (628aa)
Cytochrome c assembly protein n=1 Tax=Pedosphaera parvula Ellin514 PF9_9BACT">RepID=B9XPF9_9BACT
Cytochrome c assembly protein {ECO:0000313|EMBL:EEF58299.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
cytochrome c assembly protein
berkeley_reactor_200306_planktonic_scaffold_198771_12
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(16158..16775)
DNA (618bp) protein (206aa)
FHA domain containing protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKW3_9BACT
FHA domain containing protein {ECO:0000313|EMBL:EEF59457.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
FHA domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_198771_13
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(16836..17993)
DNA (1158bp) protein (386aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Carbamoyl-phosphate synthase small chain n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKW2_9BACT
carbamoyl-phosphate synthase small subunit
berkeley_reactor_200306_planktonic_scaffold_198771_14
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

18085..18537
DNA (453bp) protein (151aa)
Cyclase/dehydrase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZNG3_OPITP
cyclase/dehydrase
Cyclase/dehydrase {ECO:0000313|EMBL:ACB74397.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_198771_15
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(18667..20487)
DNA (1821bp) protein (607aa)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00126}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Glutamine--tRNA ligase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D9B1_9BACT
glutaminyl-tRNA synthetase
berkeley_reactor_200306_planktonic_scaffold_198771_16
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

20663..24133
DNA (3471bp) protein (1157aa)
PAS/PAC sensor hybrid histidine kinase (EC:2.7.13.3)
two-component hybrid sensor and regulator n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017458BF
Multi-sensor hybrid histidine kinase {ECO:0000313|EMBL:EEF61118.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_198771_17
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(24249..24887)
DNA (639bp) protein (213aa)
Carbonic anhydrase {ECO:0000256|RuleBase:RU003956}; EC=4.2.1.1 {ECO:0000256|RuleBase:RU003956};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
carbonate dehydratase (EC:4.2.1.1)
Carbonic anhydrase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJ14_9BACT
berkeley_reactor_200306_planktonic_scaffold_198771_18
GWC2_Elusimicrobia_56_31_curated, Elusimicrobia, Bacteria

Not on your lists

comp(24889..26061)
DNA (1173bp) protein (391aa)
hypothetical protein GobsU_17850 id=4397918 bin=GWA2_Elusimicrobia_56_46 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Elusimicrobia_56_46 organism_group=Elusimicrobia organism_desc=Good
hypothetical protein
Tax=GWC2_Elusimicrobia_56_31_curated
berkeley_reactor_200306_planktonic_scaffold_198771_19
Kineococcus radiotolerans, Kineococcus, Kineosporiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26131..26448)
DNA (318bp) protein (106aa)
phosphoribosylaminoimidazole carboxylase catalytic subunit (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=266940 species="Bacteria; Actinobacteria; Kineosporiales; Kineosporiaceae; Kineococcus.;" source="Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 /; SRS30216).;"
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) RepID=A6WEX8_KINRD
berkeley_reactor_200306_planktonic_scaffold_198771_20
Rhodovulum sp. NI22, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26539..27498)
DNA (960bp) protein (320aa)
Rhomboid family protein n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SLQ8_9RHOB
Peptidase C54 {ECO:0000313|EMBL:KGB83496.1}; TaxID=1469613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. NI22.;"
rhomboid family protein
berkeley_reactor_200306_planktonic_scaffold_198771_21
unknown

Not on your lists

comp(27615..28226)
DNA (612bp) protein (204aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_198771_22
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

28243..28842
DNA (600bp) protein (200aa)
pgsA_1; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-alcohol phosphatidyltransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJ18_9BACT
CDP-alcohol phosphatidyltransferase {ECO:0000313|EMBL:EEF60245.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_198771_23
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

28912..29385
DNA (474bp) protein (158aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJ19_9BACT
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:EEF60246.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
bcp-1; bacterioferritin comigratory protein, thiol peroxidase
berkeley_reactor_200306_planktonic_scaffold_198771_24
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

29601..30080
DNA (480bp) protein (160aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJ20_9BACT
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:EEF60247.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
alkyl hydroperoxide reductase
berkeley_reactor_200306_planktonic_scaffold_198771_25
RBG_13_Planctomycetes_50_24_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

30207..30596
DNA (390bp) protein (130aa)
BlaI family transcriptional regulator id=4153633 bin=GWF2_Planctomycetes_42_9 species=Planctomyces maris genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
putative transcriptional regulator
Tax=RBG_13_Planctomycetes_50_24_curated
berkeley_reactor_200306_planktonic_scaffold_198771_26
RBG_13_Planctomycetes_50_24_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

30618..34943
DNA (4326bp) protein (1442aa)
Putative uncharacterized protein id=4153632 bin=GWF2_Planctomycetes_42_9 species=Planctomyces maris genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
antirepressor regulating drug resistance protein
Tax=RBG_13_Planctomycetes_50_24_curated
berkeley_reactor_200306_planktonic_scaffold_198771_27
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

35342..35740
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI00036CBF19
Response regulator receiver protein {ECO:0000313|EMBL:EEF59371.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
two component transcriptional regulator, winged helix family
berkeley_reactor_200306_planktonic_scaffold_198771_28
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

35828..38674
DNA (2847bp) protein (949aa)
Aconitate hydratase 1 n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZUZ6_OPITP
aconitate hydratase 1
Aconitate hydratase 1 {ECO:0000313|EMBL:ACB75966.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_198771_29

Not on your lists

38767..39234
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DFR5_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49443.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_198771_30
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

39523..40713
DNA (1191bp) protein (397aa)
Fmu (Sun) domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMS1_9BACT
Fmu (Sun) domain protein {ECO:0000313|EMBL:EEF58846.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
RNA methyltransferase
Displaying items 1-30 of 297 in total

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