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berkeley_reactor_200306_planktonic_scaffold_198771

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Displaying items 31-60 of 297 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_198771_31
Helicobacter sp. MIT 01-6451, Helicobacter, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40747..41580)
DNA (834bp) protein (278aa)
hypothetical protein n=1 Tax=Calescamantes bacterium JGI 0000106-G12 RepID=UPI0003B6FE71
Restriction endonuclease {ECO:0000313|EMBL:KGI54096.1}; TaxID=425400 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter.;" source="Helicobacter sp. MIT 01-6451.;"
berkeley_reactor_200306_planktonic_scaffold_198771_trna_1
unknown

Not on your lists

41738..41809
DNA (72bp)
transferRNA His
berkeley_reactor_200306_planktonic_scaffold_198771_32
RBG_16_Deltaproteobacteria_58_17_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41817..42056)
DNA (240bp) protein (80aa)
Putative uncharacterized protein id=4522404 bin=GWC2_Syntrophobacterales_56_13 species=Sulfurimonas denitrificans genus=Sulfurimonas taxon_order=Campylobacterales taxon_class=Epsilonproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_58_17_curated
berkeley_reactor_200306_planktonic_scaffold_198771_33
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42111..43187)
DNA (1077bp) protein (359aa)
Sulfate/thiosulfate import ATP-binding protein CysA {ECO:0000256|HAMAP-Rule:MF_01701}; EC=3.6.3.25 {ECO:0000256|HAMAP-Rule:MF_01701};; Sulfate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01701}; TaxID=316067 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
Sulfate ABC transporter, ATPase subunit n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M631_GEODF
sulfate ABC transporter ATPase
berkeley_reactor_200306_planktonic_scaffold_198771_34
Burkholderia jiangsuensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43207..44061)
DNA (855bp) protein (285aa)
Sulfate ABC transporter inner membrane subunit CysW n=1 Tax=Burkholderia sp. RPE64 RepID=R4WVS8_9BURK
Sulfate ABC transporter permease {ECO:0000313|EMBL:KAK48973.1}; TaxID=1458357 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia jiangsuensis.;"
cysW; sulfate ABC transporter inner membrane subunit CysW
berkeley_reactor_200306_planktonic_scaffold_198771_35
Methylobacillus flagellatus, Methylobacillus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44058..44897)
DNA (840bp) protein (280aa)
Sulfate ABC transporter, permease protein CysT n=1 Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=Q1H3Q6_METFK
Sulfate ABC transporter, permease protein CysT
Sulfate ABC transporter, permease protein CysT {ECO:0000313|EMBL:ABE48881.1}; TaxID=265072 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylobacillus.;" source="Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875).;"
berkeley_reactor_200306_planktonic_scaffold_198771_36
Ricinus communis, Ricinus, Malpighiales, rosids, Streptophyta, Viridiplantae

Not on your lists

comp(44898..45896)
DNA (999bp) protein (333aa)
Sulfate-binding protein, putative n=1 Tax=Ricinus communis RepID=B9TB09_RICCO
Sulfate-binding protein, putative {ECO:0000313|EMBL:EEF26955.1}; TaxID=3988 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus.;" source="Ricinus communis (Castor bean).;"
sbp; sulfate transporter subunit; periplasmic-binding component of ABC superfamily
berkeley_reactor_200306_planktonic_scaffold_198771_37
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45952..47325)
DNA (1374bp) protein (458aa)
Phosphate-selective porin O and P n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WVA5_PSEUU
phosphate-selective porin O and P
Phosphate-selective porin O and P {ECO:0000313|EMBL:ADV28104.1}; Flags: Precursor;; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
berkeley_reactor_200306_planktonic_scaffold_198771_38
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(47406..47600)
DNA (195bp) protein (65aa)
Uncharacterized small protein n=2 Tax=unclassified Opitutaceae RepID=I6B216_9BACT
hypothetical protein
Uncharacterized small protein {ECO:0000313|EMBL:EIQ01308.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
berkeley_reactor_200306_planktonic_scaffold_198771_39
CG_Anaero_03, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(47782..48243)
DNA (462bp) protein (154aa)
Rrf2 family transcriptional regulator n=1 Tax=Schlesneria paludicola RepID=UPI00029A24C6
Rrf2 family transcriptional regulator
Tax=CG_Anaero_03
berkeley_reactor_200306_planktonic_scaffold_198771_40
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(48646..50121)
DNA (1476bp) protein (492aa)
Adenosylhomocysteinase {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548}; EC=3.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548};; S-adenosyl-L-homocysteine hydrolase {ECO:0000256|HAMAP-Rule:MF_00563}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
S-adenosyl-L-homocysteine hydrolase (EC:3.3.1.1)
Adenosylhomocysteinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XT53_9BACT
berkeley_reactor_200306_planktonic_scaffold_198771_41
Cylindrospermum stagnale, Cylindrospermum, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(50166..50942)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Cylindrospermum stagnale PCC 7417 RepID=K9WR86_9NOST
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFZ22698.1}; TaxID=56107 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Cylindrospermum.;" source="Cylindrospermum stagnale PCC 7417.;"
berkeley_reactor_200306_planktonic_scaffold_198771_42
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

comp(50998..52212)
DNA (1215bp) protein (405aa)
S-adenosylmethionine synthetase (EC:2.5.1.6)
S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541}; Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541};; MAT {ECO:0000256|HAMAP-Rule:MF_00086}; Methionine adenosyltransferase {ECO:0000256|HAMAP-Rule:MF_00086}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
S-adenosylmethionine synthetase n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017448D0
berkeley_reactor_200306_planktonic_scaffold_198771_43
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

52702..53634
DNA (933bp) protein (311aa)
Methyltransferase type 11 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XT55_9BACT
Methyltransferase type 11 {ECO:0000313|EMBL:EEF56979.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ArsR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_198771_44
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

53695..56133
DNA (2439bp) protein (813aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFQ3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61417.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
3-carboxymuconate cyclase
berkeley_reactor_200306_planktonic_scaffold_198771_45
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

56362..56925
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFB0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61608.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_198771_46
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

57498..58403
DNA (906bp) protein (302aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZMV0_OPITP
alkyl hydroperoxide reductase
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:ACB75378.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_198771_47
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

58428..59450
DNA (1023bp) protein (341aa)
alpha-N-arabinofuranosidase (EC:3.2.1.55)
Alpha-N-arabinofuranosidase {ECO:0000313|EMBL:ACB74651.1}; EC=3.2.1.55 {ECO:0000313|EMBL:ACB74651.1};; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
Alpha-N-arabinofuranosidase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZRX2_OPITP
berkeley_reactor_200306_planktonic_scaffold_198771_48
Leptospira wolffii, Leptospira, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(59457..60383)
DNA (927bp) protein (309aa)
Phospholipase, patatin family n=1 Tax=Leptospira wolffii serovar Khorat str. Khorat-H2 RepID=S3VM22_9LEPT
Phospholipase, patatin family {ECO:0000313|EMBL:EPG65129.1}; TaxID=1193069 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira wolffii serovar Khorat str. Khorat-H2.;"
phospholipase
berkeley_reactor_200306_planktonic_scaffold_198771_49
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

60697..61389
DNA (693bp) protein (231aa)
Transcriptional regulator, XRE family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D2K8_9BACT
Transcriptional regulator, XRE family {ECO:0000313|EMBL:EDY19448.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
response regulator receiver protein
berkeley_reactor_200306_planktonic_scaffold_198771_50
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

61519..62040
DNA (522bp) protein (174aa)
Fibronectin type III domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XD54_9BACT
Fibronectin type III domain protein {ECO:0000313|EMBL:EEF62400.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
fibronectin type III domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_198771_trna_4
unknown

Not on your lists

comp(62073..62144)
DNA (72bp)
transferRNA Val
berkeley_reactor_200306_planktonic_scaffold_198771_51
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

62179..62424
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XI97_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60358.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_198771_52
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(62431..63477)
DNA (1047bp) protein (349aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSA0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57270.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_198771_53
Asticcacaulis excentricus, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

63577..65040
DNA (1464bp) protein (488aa)
sialate o-acetylesterase (EC:3.1.1.53)
Sialate O-acetylesterase {ECO:0000313|EMBL:ADU12978.1}; EC=3.1.1.53 {ECO:0000313|EMBL:ADU12978.1};; Flags: Precursor;; TaxID=573065 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis excentricus (strain ATCC 15261 / DSM 4724 / VKM B-1370 /; CB 48).;"
Sialate O-acetylesterase n=1 Tax=Asticcacaulis excentricus (strain ATCC 15261 / DSM 4724 / VKM B-1370 / CB 48) RepID=E8RP08_ASTEC
berkeley_reactor_200306_planktonic_scaffold_198771_54
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(65318..66421)
DNA (1104bp) protein (368aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI00037A4A3C
aldolase
Aldolase {ECO:0000313|EMBL:AHF89561.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_198771_55
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(66505..66810)
DNA (306bp) protein (102aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI0003615227
carbon dioxide concentrating mechanism protein CcmL
Carbon dioxide concentrating mechanism protein CcmL {ECO:0000313|EMBL:AHF89560.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_198771_56

Not on your lists

comp(66956..67234)
DNA (279bp) protein (93aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI00037B0629
Uncharacterized protein {ECO:0000313|EMBL:KKN82983.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
ethanolamine utilization protein EutN/carboxysome structural protein Ccml
berkeley_reactor_200306_planktonic_scaffold_198771_57
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(67400..68905)
DNA (1506bp) protein (502aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI00037F3AF7
aldehyde dehydrogenase
Aldehyde Dehydrogenase {ECO:0000313|EMBL:ACB74580.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_198771_58
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(68982..69296)
DNA (315bp) protein (105aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI00036E19C3
ethanolamine utilization protein EutN
Tax=GWF2_Verrucomicrobia_62_7_curated
Displaying items 31-60 of 297 in total

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