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berkeley_reactor_200306_planktonic_scaffold_198771

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Displaying items 91-120 of 297 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_198771_89
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

106137..107165
DNA (1029bp) protein (343aa)
von Willebrand factor type A n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQJ6_9BACT
von Willebrand factor type A {ECO:0000313|EMBL:EEF57921.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_198771_90
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

107162..108097
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQJ7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57922.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_198771_91
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

108105..109886
DNA (1782bp) protein (594aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQJ8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57923.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_198771_92
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

109883..110626
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQJ9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57924.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_198771_93
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

110695..111573
DNA (879bp) protein (293aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSF8_9BACT
dapA; dihydrodipicolinate synthase/N-acetylneuraminate lyase
berkeley_reactor_200306_planktonic_scaffold_198771_94
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

111654..112388
DNA (735bp) protein (245aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSF7_9BACT
dihydrodipicolinate reductase
berkeley_reactor_200306_planktonic_scaffold_198771_95
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

112510..112959
DNA (450bp) protein (150aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSF6_9BACT
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase {ECO:0000313|EMBL:EEF57221.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
berkeley_reactor_200306_planktonic_scaffold_198771_96
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

112996..113370
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGN0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61081.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_198771_trna_3
unknown

Not on your lists

comp(114309..114381)
DNA (73bp)
transferRNA Ala
berkeley_reactor_200306_planktonic_scaffold_198771_97
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

114561..115541
DNA (981bp) protein (327aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGP9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61100.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
glycosyl transferase family 2
berkeley_reactor_200306_planktonic_scaffold_198771_98
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(115538..115891)
DNA (354bp) protein (118aa)
Phosphotransferase system, phosphocarrier protein HPr n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZY96_OPITP
phosphotransferase system, phosphocarrier protein HPr
Phosphotransferase system, phosphocarrier protein HPr {ECO:0000313|EMBL:ACB76242.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_198771_99
Turneriella parva, Turneriella, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(115953..116777)
DNA (825bp) protein (275aa)
tRNA/rRNA methyltransferase (SpoU) n=1 Tax=Turneriella parva (strain ATCC BAA-1111 / DSM 21527 / NCTC 11395 / H) RepID=I4B3B1_TURPD
tRNA/rRNA methyltransferase (SpoU)
tRNA/rRNA methyltransferase (SpoU) {ECO:0000313|EMBL:AFM11768.1}; TaxID=869212 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Turneriella.;" source="Turneriella parva (strain ATCC BAA-1111 / DSM 21527 / NCTC 11395 / H); (Leptospira parva).;"
berkeley_reactor_200306_planktonic_scaffold_198771_100
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(116820..117665)
DNA (846bp) protein (282aa)
Beta-lactamase domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGP5_9BACT
Beta-lactamase domain protein {ECO:0000313|EMBL:EEF61096.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
metal-dependent hydrolase
berkeley_reactor_200306_planktonic_scaffold_198771_101
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

117793..120582
DNA (2790bp) protein (930aa)
Conserved repeat domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DB66_9BACT
Conserved repeat domain protein {ECO:0000313|EMBL:EDY16344.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Sedolisin
berkeley_reactor_200306_planktonic_scaffold_198771_102
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

120617..126769
DNA (6153bp) protein (2051aa)
Conserved repeat domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DB66_9BACT
Conserved repeat domain protein {ECO:0000313|EMBL:EDY16344.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Sedolisin
berkeley_reactor_200306_planktonic_scaffold_198771_103
RBG_13_Deltaproteobacteria_58_19_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

126933..128366
DNA (1434bp) protein (478aa)
tRNA(Ile)-lysidine synthase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGF3_9BACT
tRNA(Ile)-lysidine synthetase
Tax=RBG_13_Deltaproteobacteria_58_19_curated
berkeley_reactor_200306_planktonic_scaffold_198771_104
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


128463..128720
DNA (258bp) protein (86aa)
30S ribosomal protein S15 n=2 Tax=Caldanaerobacter subterraneus RepID=RS15_THETN
rpsO; 30S ribosomal protein S15
Tax=GWF2_Verrucomicrobia_62_7_curated
berkeley_reactor_200306_planktonic_scaffold_198771_105
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

128938..131094
DNA (2157bp) protein (719aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000313|EMBL:EEF57348.1}; EC=2.7.7.8 {ECO:0000313|EMBL:EEF57348.1};; Flags: Fragment;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase (Fragment) n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XS52_9BACT
berkeley_reactor_200306_planktonic_scaffold_198771_106
unknown

Not on your lists

comp(131155..131982)
DNA (828bp) protein (276aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_198771_107
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(132187..133986)
DNA (1800bp) protein (600aa)
Oligoendopeptidase, M3 family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIA2_9BACT
Oligoendopeptidase, M3 family {ECO:0000313|EMBL:EEF60363.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
oligoendopeptidase
berkeley_reactor_200306_planktonic_scaffold_198771_108
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(134049..135467)
DNA (1419bp) protein (473aa)
Glycoside hydrolase family 28 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TN26_NIAKG
glycoside hydrolase family protein
Glycoside hydrolase family 28 {ECO:0000313|EMBL:AEV97711.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_planktonic_scaffold_198771_109
Caenorhabditis remanei, Caenorhabditis, Rhabditida, Chromadorea, Nematoda, Metazoa

Not on your lists

comp(135631..136740)
DNA (1110bp) protein (370aa)
Putative uncharacterized protein n=1 Tax=Caenorhabditis remanei RepID=E3NFS2_CAERE
Putative uncharacterized protein {ECO:0000313|EMBL:EFO96492.1}; TaxID=31234 species="Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.;" source="Caenorhabditis remanei (Caenorhabditis vulgaris).;"
berkeley_reactor_200306_planktonic_scaffold_198771_110
RBG_16_Deltaproteobacteria_50_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(136798..139197)
DNA (2400bp) protein (800aa)
FG-GAP repeat/calx-beta domain protein (Modular protein) n=1 Tax=Microcystis aeruginosa PCC 9807 RepID=I4H7R1_MICAE
FG-GAP repeat-calx-beta domain-containing protein
Tax=RBG_16_Deltaproteobacteria_50_11_curated
berkeley_reactor_200306_planktonic_scaffold_198771_111
unknown

Not on your lists

comp(139206..140741)
DNA (1536bp) protein (512aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_198771_112
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(140894..142738)
DNA (1845bp) protein (615aa)
Chaperone protein HtpG n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XE68_9BACT
Chaperone protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505}; Heat shock protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505}; High temperature protein G {ECO:0000256|HAMAP-Rule:MF_00505}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
heat shock protein 90
berkeley_reactor_200306_planktonic_scaffold_198771_113

Not on your lists

142886..143098
DNA (213bp) protein (71aa)
2-oxoisovalerate dehydrogenase E1 component subunit beta n=1 Tax=mine drainage metagenome RepID=T1CGA7_9ZZZZ
2-oxoisovalerate dehydrogenase E1 component subunit beta {ECO:0000313|EMBL:EQD66065.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_198771_114
unknown

Not on your lists

comp(143157..143474)
DNA (318bp) protein (106aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_198771_115
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

comp(143537..146317)
DNA (2781bp) protein (927aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI00035D9785
Putative heavy metal translocating P-type ATPase {ECO:0000313|EMBL:BAL99273.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
ATPase P
berkeley_reactor_200306_planktonic_scaffold_198771_116
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(146515..147174)
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XK30_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59853.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
glutathione S-transferase
berkeley_reactor_200306_planktonic_scaffold_198771_117
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

147581..148255
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XK29_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59852.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Displaying items 91-120 of 297 in total

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