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berkeley_reactor_200306_planktonic_scaffold_198771

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Displaying items 271-297 of 297 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_198771_267
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(331193..331744)
DNA (552bp) protein (184aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CU29_9BACT
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EDY22067.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
sigH; sigma factor SigH
berkeley_reactor_200306_planktonic_scaffold_198771_268
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

331835..332599
DNA (765bp) protein (255aa)
Glycosyl transferase family 2 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMU3_9BACT
Glycosyl transferase family 2 {ECO:0000313|EMBL:EEF58868.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
putative glycosyl transferase family 2
berkeley_reactor_200306_planktonic_scaffold_198771_269
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(332591..333373)
DNA (783bp) protein (261aa)
Metallophosphoesterase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIZ9_9BACT
Metallophosphoesterase {ECO:0000313|EMBL:EEF60226.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
metallophosphoesterase
berkeley_reactor_200306_planktonic_scaffold_198771_270
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(333512..334489)
DNA (978bp) protein (326aa)
Glycosyl transferase family 4 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XDX2_9BACT
Glycosyl transferase family 4 {ECO:0000313|EMBL:EEF61863.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
glycosyl transferase family protein
berkeley_reactor_200306_planktonic_scaffold_198771_271
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(334486..335670)
DNA (1185bp) protein (395aa)
Glycosyl transferase group 1 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XDX1_9BACT
Glycosyl transferase group 1 {ECO:0000313|EMBL:EEF61862.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
glycosyl transferase (WbnE)
berkeley_reactor_200306_planktonic_scaffold_198771_272
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(335680..338634)
DNA (2955bp) protein (985aa)
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XDX0_9BACT
Tetratricopeptide TPR_2 repeat protein {ECO:0000313|EMBL:EEF61861.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_198771_273
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(338677..339894)
DNA (1218bp) protein (406aa)
RNA methyltransferase, TrmA family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XDW9_9BACT
RNA methyltransferase, TrmA family {ECO:0000313|EMBL:EEF61860.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
RNA methyltransferase, TrmA family
berkeley_reactor_200306_planktonic_scaffold_198771_274
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(339936..341756)
DNA (1821bp) protein (607aa)
Chloride channel core n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XDX3_9BACT
Chloride channel core {ECO:0000313|EMBL:EEF61864.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Chloride channel protein
berkeley_reactor_200306_planktonic_scaffold_198771_275
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(341847..344336)
DNA (2490bp) protein (830aa)
Uncharacterized protein n=1 Tax=Bacteroides ovatus CL02T12C04 RepID=I8YAS4_BACOV
Uncharacterized protein {ECO:0000313|EMBL:EIY59437.1}; TaxID=997885 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus CL02T12C04.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_198771_276
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

Not on your lists

344702..345505
DNA (804bp) protein (268aa)
Putative uncharacterized protein id=4378450 bin=GWF2_Lentisphaerae_49_21 species=Planctomyces brasiliensis genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
putative acetyl xylan esterase AxeA
Tax=GWF2_Lentisphaerae_49_21_curated
berkeley_reactor_200306_planktonic_scaffold_198771_277
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

345686..348181
DNA (2496bp) protein (832aa)
Phospholipase C, phosphocholine-specific {ECO:0000313|EMBL:AEI51775.1}; EC=3.1.4.3 {ECO:0000313|EMBL:AEI51775.1};; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
Phospholipase C, phosphocholine-specific n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EQM5_RUNSL
phospholipase C, phosphocholine-specific
berkeley_reactor_200306_planktonic_scaffold_198771_278
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(348313..349050)
DNA (738bp) protein (246aa)
Uncharacterized protein n=2 Tax=unclassified Opitutaceae RepID=I6B2U8_9BACT
MFS transporter
MFS transporter {ECO:0000313|EMBL:AHF93296.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_198771_279
unknown

Not on your lists

comp(349338..350180)
DNA (843bp) protein (281aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_198771_280
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(350708..351112)
DNA (405bp) protein (135aa)
Putative nitrogen regulation protein NtrX n=1 Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=Q603F8_METCA
nitrogen regulation protein NtrX
Putative nitrogen regulation protein NtrX {ECO:0000313|EMBL:AAU91127.1}; TaxID=243233 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath).;"
berkeley_reactor_200306_planktonic_scaffold_198771_281
Flexibacter litoralis, Flexibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(351809..353116)
DNA (1308bp) protein (436aa)
Uncharacterized protein n=1 Tax=Flexibacter litoralis (strain ATCC 23117 / DSM 6794 / NBRC 15988 / NCIMB 1366 / Sio-4) RepID=I4APW1_FLELS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFM05996.1}; Flags: Precursor;; TaxID=880071 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Flexibacter.;" source="Flexibacter litoralis (strain ATCC 23117 / DSM 6794 / NBRC 15988 /; NCIMB 1366 / Sio-4).;"
berkeley_reactor_200306_planktonic_scaffold_198771_282
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(354084..354548)
DNA (465bp) protein (155aa)
Gll0250 protein n=1 Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NP08_GLOVI
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
berkeley_reactor_200306_planktonic_scaffold_198771_283
unknown

Not on your lists

354786..354989
DNA (204bp) protein (68aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_198771_284
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(356195..357787)
DNA (1593bp) protein (531aa)
GTPase Der n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIX9_9BACT
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ribosome-associated GTPase EngA
berkeley_reactor_200306_planktonic_scaffold_198771_285
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

357954..358319
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIY0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60207.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_198771_286
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(358499..359275)
DNA (777bp) protein (259aa)
TPR repeat-containing protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XN18_9BACT
TPR repeat-containing protein {ECO:0000313|EMBL:EEF58814.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_198771_287
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

359426..366790
DNA (7365bp) protein (2455aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XP38_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58394.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_198771_288
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

366844..367605
DNA (762bp) protein (254aa)
Glycosyl transferase family 2 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XN17_9BACT
Glycosyl transferase family 2 {ECO:0000313|EMBL:EEF58813.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
glycosyl transferase family 2
berkeley_reactor_200306_planktonic_scaffold_198771_289
Coraliomargarita akajimensis, Coraliomargarita, Puniceicoccales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

367853..368416
DNA (564bp) protein (188aa)
flavoprotein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746A8D
NADPH-dependent FMN reductase
NADPH-dependent FMN reductase {ECO:0000313|EMBL:ADE54064.1}; TaxID=583355 species="Bacteria; Verrucomicrobia; Opitutae; Puniceicoccales; Puniceicoccaceae; Coraliomargarita.;" source="Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193; / KCTC 12865).;"
berkeley_reactor_200306_planktonic_scaffold_198771_290
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

368469..368999
DNA (531bp) protein (177aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XN12_9BACT
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:EEF58808.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
bacterioferritin comigratory protein
berkeley_reactor_200306_planktonic_scaffold_198771_291
Geitlerinema sp. PCC 7407, Geitlerinema, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

369104..369811
DNA (708bp) protein (236aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Geitlerinema sp. PCC 7407 RepID=K9S477_9CYAN
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AFY64965.1}; TaxID=1173025 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Geitlerinema.;" source="Geitlerinema sp. PCC 7407.;"
berkeley_reactor_200306_planktonic_scaffold_198771_292
Nostoc sp. PCC 7107, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

369826..371031
DNA (1206bp) protein (402aa)
hypothetical protein n=1 Tax=Calothrix sp. PCC 7103 RepID=UPI000319C8CC
proteinase inhibitor I4 serpin
Proteinase inhibitor I4 serpin {ECO:0000313|EMBL:AFY44740.1}; Flags: Precursor;; TaxID=317936 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc sp. PCC 7107.;"
berkeley_reactor_200306_planktonic_scaffold_198771_293
RLO_RIF02_62_27, RIF2, Bacteria

Not on your lists

comp(371335..373869)
DNA (2535bp) protein (845aa)
Beta-glucosidase-related glycosidase id=4116300 bin=GWF2_Lentisphaerae_57_35 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
glycoside hydrolase family 3
Tax=RIFCSPLOWO2_12_FULL_RIF02_62_27_curated
Displaying items 271-297 of 297 in total

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