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berkeley_reactor_200306_planktonic_scaffold_198771

Search features with annotation key words

Displaying items 211-240 of 297 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_198771_208
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

262646..263329
DNA (684bp) protein (228aa)
Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IMS2_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF92718.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_198771_209
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

263298..264227
DNA (930bp) protein (310aa)
Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IMS3_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF94691.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_198771_210
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

264224..265357
DNA (1134bp) protein (378aa)
Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IMS4_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF92719.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_198771_211
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

265354..266016
DNA (663bp) protein (221aa)
Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IMS5_9BACT
hypothetical protein
Tax=GWF2_Lentisphaerae_50_93_curated
berkeley_reactor_200306_planktonic_scaffold_198771_212
unknown

Not on your lists

266137..266388
DNA (252bp) protein (84aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_198771_213
unknown

Not on your lists

266707..266943
DNA (237bp) protein (79aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_198771_214
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

267108..271802
DNA (4695bp) protein (1565aa)
Helicase, C-terminal n=1 Tax=mine drainage metagenome RepID=E6QW78_9ZZZZ
helicase, C-terminal, partial
Helicase, C-terminal, partial {ECO:0000313|EMBL:BAO29738.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
berkeley_reactor_200306_planktonic_scaffold_198771_215
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(271875..272783)
DNA (909bp) protein (303aa)
LysR family transcriptional regulator n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745DD5
Transcriptional regulator {ECO:0000313|EMBL:CDM66657.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
LysR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_198771_216
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

272954..273280
DNA (327bp) protein (109aa)
Putative transcriptional regulator n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6B2E9_9BACT
Putative transcriptional regulator {ECO:0000313|EMBL:EIQ01441.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_198771_217
unknown

Not on your lists

273334..273558
DNA (225bp) protein (75aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_198771_218
unknown

Not on your lists

273565..274170
DNA (606bp) protein (202aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_198771_219
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

274201..275313
DNA (1113bp) protein (371aa)
Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IYY6_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF89874.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_198771_trna_2
unknown

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comp(275949..276021)
DNA (73bp)
transferRNA Arg
berkeley_reactor_200306_planktonic_scaffold_198771_220

Not on your lists

276393..276692
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Magnetospirillum sp. SO-1 RepID=M3AFQ4_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KKN80619.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_198771_221
Synechococcus sp. PCC 6312, Synechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

276769..278565
DNA (1797bp) protein (599aa)
Uncharacterized protein n=1 Tax=Synechococcus sp. (strain ATCC 27167 / PCC 6312) RepID=K9RS23_SYNP3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFY60331.1}; TaxID=195253 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.;" source="Synechococcus sp. (strain ATCC 27167 / PCC 6312).;"
berkeley_reactor_200306_planktonic_scaffold_198771_222
unknown

Not on your lists

comp(278709..278930)
DNA (222bp) protein (74aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_198771_223
Halorhodospira halochloris, Halorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(278977..279798)
DNA (822bp) protein (274aa)
Uncharacterized protein n=2 Tax=Nitrosococcus oceani RepID=Q3JF82_NITOC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHK79081.1}; TaxID=1354791 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Halorhodospira.;" source="Halorhodospira halochloris str. A.;"
berkeley_reactor_200306_planktonic_scaffold_198771_224
unknown

Not on your lists

comp(279881..280078)
DNA (198bp) protein (66aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_198771_225
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(280712..281146)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CXN5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY21033.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_198771_226
R_RIF_OD1_11_51_15, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(281153..281674)
DNA (522bp) protein (174aa)
DNA repair protein RadC n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSW5_9BACT
DNA repair protein
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_11_51_15_curated
berkeley_reactor_200306_planktonic_scaffold_198771_227
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(282307..282831)
DNA (525bp) protein (175aa)
Transcription regulator MerR DNA binding protein n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C2D1_NITHN
transcription regulator MerR DNA binding protein
Transcription regulator MerR DNA binding protein {ECO:0000313|EMBL:ADE14790.1}; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
berkeley_reactor_200306_planktonic_scaffold_198771_228
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(282890..283129)
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VHX0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL86811.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
heavy-metal-associated domain protein
berkeley_reactor_200306_planktonic_scaffold_198771_229
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(283148..285625)
DNA (2478bp) protein (826aa)
copper-translocating P-type ATPase (EC:3.6.3.4)
ATPase P {ECO:0000313|EMBL:KDP87233.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
heavy metal translocating P-type ATPase id=12556454 bin=CNBR_ACIDO species=Rhodanobacter sp. 115 genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
berkeley_reactor_200306_planktonic_scaffold_198771_230

Not on your lists

comp(285784..286995)
DNA (1212bp) protein (404aa)
Major facilitator superfamily MFS_1 n=1 Tax=mine drainage metagenome RepID=E6QMN0_9ZZZZ
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:CBI08501.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
major Facilitator Superfamily protein
berkeley_reactor_200306_planktonic_scaffold_198771_231
Hymenobacter sp. APR13, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(287068..287757)
DNA (690bp) protein (230aa)
thiol:disulfide interchange protein id=12556459 bin=CNBR_ACIDO species=Nafulsella turpanensis genus=Nafulsella taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AII54459.1}; TaxID=1356852 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter sp. APR13.;"
berkeley_reactor_200306_planktonic_scaffold_198771_232
Moorella thermoacetica, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(287754..288146)
DNA (393bp) protein (131aa)
Heavy metal translocating P-type ATPase n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RGZ9_MOOTA
heavy metal translocating P-type ATPase
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:ABC20290.1}; TaxID=264732 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="Moorella thermoacetica (strain ATCC 39073).;"
berkeley_reactor_200306_planktonic_scaffold_198771_233
unknown

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comp(290041..290394)
DNA (354bp) protein (118aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_198771_234
Synechococcus phage S-SSM5, Caudovirales, Viruses

Not on your lists

290488..291492
DNA (1005bp) protein (335aa)
Putative uncharacterized protein n=1 Tax=Synechococcus phage S-SSM5 RepID=E3SK99_9CAUD
Putative uncharacterized protein {ECO:0000313|EMBL:ADO98011.1}; TaxID=445685 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Myoviridae.;" source="Synechococcus phage S-SSM5.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_198771_235
unknown

Not on your lists

292161..293174
DNA (1014bp) protein (338aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_198771_236
unknown

Not on your lists

comp(293207..293572)
DNA (366bp) protein (122aa)

This feature has no annotations

Displaying items 211-240 of 297 in total

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