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berkeley_reactor_200306_planktonic_scaffold_198771_215

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(271875..272783)

Top 3 Functional Annotations

Value Algorithm Source
LysR family transcriptional regulator n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745DD5 similarity UNIREF
DB: UNIREF100
  • Identity: 41.0
  • Coverage: 290.0
  • Bit_score: 229
  • Evalue 3.90e-57
Transcriptional regulator {ECO:0000313|EMBL:CDM66657.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 44.5
  • Coverage: 292.0
  • Bit_score: 247
  • Evalue 1.90e-62
LysR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 39.6
  • Coverage: 293.0
  • Bit_score: 212
  • Evalue 1.40e-52

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Taxonomy

Pyrinomonas methylaliphatogenes → Pyrinomonas → Acidobacteria → Bacteria

Sequences

DNA sequence
Length: 909
GTGGAGATAAATCAACTCAGATATTTTTTATCGGTCGTCGAAGTAGGCAGCTTCAGCAAAGCTGCCTTGCACTGTTTCATTTCGCAGCCAGCCCTGAGCGTGCAAATCCAAAAGCTTGAAGACGAGGTCGGGAAAACATTGCTTCATCGAACCCCCAAAAAAATTGTGCCGACAGAGGCGGGTTTTCTACTGGTAGAACGGGCAAAGGCTGCGCTGGCACAAATTGAAATGGCAAAAAAGGAAATCCAAAACCTCAATCACAGCAACGCCGGCAGGATGAATTTCGGGATTTTGCCAACCGTCGCACCGTATTTGCTTGAACGCGTCATGGAATCATTCAGCAAGCAATGCCCGCAAATCGAAATATCCATTCAAGAAGGCACAGCGTCGCAGTTGTTAAAGTTGATAGAAACGGGCGACTTGGATTTGGGAATTGTCAGCCTGCCCGTCACTCAGAATGGTTTTGAAAAGGAAATTTTGTTTTCTGAAGAAATGGTTCTCGCCATGCCGTCATTTCATCCACTCGCCAAAAAATCTGCAATCCATATTCGCGACTTGGAATCTGAAAAATTCATTTTGTTGCAGGATGGGCATTGTTTGGAAAAGCAGGTTGCCAGTTTCTGTAAAAAGCACGCCGTCTGCCCACACTACTTAATCCGGTGTGGTCAATTAACGACAATTAAATCTCTGGTCGCGGCGGGAATGGGAATTTCATTGATTCCGCAGATGGCGATACGAAAAATGCCCAAAAAGGTCATTTATCGGCGGCTGGAAGATCCAAAACCCAAACGAGCCATAGCCGCTGTCACCAAAAGCAAACGACCATTGAAAAAACCGACAGAATGGTTCCTGCGGCATCTGCGGCAAGTGGCGGTTTTGCTGCCGGTAATCAATGATTATTTATCATGA
PROTEIN sequence
Length: 303
VEINQLRYFLSVVEVGSFSKAALHCFISQPALSVQIQKLEDEVGKTLLHRTPKKIVPTEAGFLLVERAKAALAQIEMAKKEIQNLNHSNAGRMNFGILPTVAPYLLERVMESFSKQCPQIEISIQEGTASQLLKLIETGDLDLGIVSLPVTQNGFEKEILFSEEMVLAMPSFHPLAKKSAIHIRDLESEKFILLQDGHCLEKQVASFCKKHAVCPHYLIRCGQLTTIKSLVAAGMGISLIPQMAIRKMPKKVIYRRLEDPKPKRAIAAVTKSKRPLKKPTEWFLRHLRQVAVLLPVINDYLS*