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berkeley_reactor_200306_planktonic_scaffold_198771

Search features with annotation key words

Displaying items 61-90 of 297 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_198771_59
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(69367..69648)
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI000364586D
carboxysome shell protein
Carboxysome shell protein {ECO:0000313|EMBL:AHF89556.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_198771_60
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(69849..71066)
DNA (1218bp) protein (406aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI00035D246F
acetate kinase
berkeley_reactor_200306_planktonic_scaffold_198771_61
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(71154..71411)
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI0003653B26
carbon dioxide concentrating mechanism/carboxysome shell protein
Tax=GWF2_Verrucomicrobia_62_7_curated
berkeley_reactor_200306_planktonic_scaffold_198771_62
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(71473..71763)
DNA (291bp) protein (97aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI000380D1A7
carboxysome shell protein
Carbon dioxide concentrating mechanism/carboxysome shell protein {ECO:0000313|EMBL:EIQ00028.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
berkeley_reactor_200306_planktonic_scaffold_198771_63
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(71964..72641)
DNA (678bp) protein (226aa)
Phosphate propanoyltransferase {ECO:0000256|PIRNR:PIRNR010130}; EC=2.3.1.222 {ECO:0000256|PIRNR:PIRNR010130};; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI00036674F6
transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_198771_64
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

72919..73374
DNA (456bp) protein (152aa)
Transposase id=4449892 bin=GWC2_Ignavibacteria_56_12 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
transposase
Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
berkeley_reactor_200306_planktonic_scaffold_198771_65
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

73791..74600
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI000361D533
DeoR family transcriptional regulator
Tax=GWF2_Verrucomicrobia_62_7_curated
berkeley_reactor_200306_planktonic_scaffold_198771_66
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

74885..76198
DNA (1314bp) protein (438aa)
Respiratory-chain NADH dehydrogenase domain 51 kDa subunit n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZMR0_OPITP
respiratory-chain NADH dehydrogenase domain-containing protein
Respiratory-chain NADH dehydrogenase domain 51 kDa subunit {ECO:0000313|EMBL:ACB75338.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_198771_67
unknown

Not on your lists

76203..76415
DNA (213bp) protein (71aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_198771_68
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

76451..77002
DNA (552bp) protein (184aa)
Microcompartments protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZMR1_OPITP
microcompartments protein
Microcompartments protein {ECO:0000313|EMBL:ACB75339.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_198771_69
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

77094..78590
DNA (1497bp) protein (499aa)
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCZ0_9BACT
Integral membrane sensor signal transduction histidine kinase {ECO:0000313|EMBL:EEF62336.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
histidine kinase
berkeley_reactor_200306_planktonic_scaffold_198771_70
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

78587..79252
DNA (666bp) protein (222aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCZ1_9BACT
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:EEF62337.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
LuxR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_198771_71
unknown

Not on your lists

79645..80409
DNA (765bp) protein (255aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_198771_72
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

80663..81469
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI0003674E4A
Uncharacterized protein {ECO:0000313|EMBL:EEF63067.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
prepilin-type N-terminal cleavage/methylation domain
berkeley_reactor_200306_planktonic_scaffold_198771_73
RLO_RIF05_58_11, RIF5, Bacteria

Not on your lists

81478..84912
DNA (3435bp) protein (1145aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4YC16_SORCE
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_RIF05_58_11_curated
berkeley_reactor_200306_planktonic_scaffold_198771_74
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

84940..88233
DNA (3294bp) protein (1098aa)
Glycoside hydrolase family 2 n=1 Tax=Rhodopirellula sp. SWK7 RepID=M5T167_9PLAN
family 2 glycoside hydrolase
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
berkeley_reactor_200306_planktonic_scaffold_198771_75
unknown

Not on your lists

88911..89804
DNA (894bp) protein (298aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_198771_76
unknown

Not on your lists

90046..90666
DNA (621bp) protein (207aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_198771_77
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(91103..91999)
DNA (897bp) protein (299aa)
Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1J121_9BACT
membrane protein
Membrane protein {ECO:0000313|EMBL:AHF90151.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_198771_78
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

92323..93996
DNA (1674bp) protein (558aa)
malate dehydrogenase (EC:1.1.1.40); K00029 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] id=14623223 bin=bin5_DeltaP species=unknown genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=bin5_DeltaP organism_group=Deltaproteobacteria
malic protein NAD-binding protein (EC:1.1.1.40)
Tax=CG_Arma_01
berkeley_reactor_200306_planktonic_scaffold_198771_79
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

94059..95081
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPZ5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58092.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_198771_80
Methyloglobulus morosus, Methyloglobulus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

95706..96947
DNA (1242bp) protein (414aa)
PDK repeat-containing protein n=1 Tax=Methyloglobulus morosus KoM1 RepID=V5BX49_9GAMM
PDK repeat-containing protein {ECO:0000313|EMBL:ESS72439.1}; TaxID=1116472 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methyloglobulus.;" source="Methyloglobulus morosus KoM1.;"
repeat-containing protein
berkeley_reactor_200306_planktonic_scaffold_198771_81
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(97370..97903)
DNA (534bp) protein (178aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AB-629-E09 RepID=UPI000373B252
NusG antitermination factor
NusG antitermination factor {ECO:0000313|EMBL:ACB76915.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_198771_82
RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

98115..100358
DNA (2244bp) protein (748aa)
Multi-sensor hybrid histidine kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CVM2_9BACT
PAS domain-containing protein
Tax=RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated
berkeley_reactor_200306_planktonic_scaffold_198771_83
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(100446..101132)
DNA (687bp) protein (229aa)
LuxR family transcriptional regulator n=1 Tax=Verrucomicrobium spinosum RepID=UPI000174581E
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:EEF63090.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
two component LuxR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_198771_84
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

101588..102010
DNA (423bp) protein (141aa)
histidine kinase
PAS domain S-box id=4696831 bin=GWC2_Methylomirabilis_70_16 species=Caulobacter sp. AP07 genus=Caulobacter taxon_order=Caulobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
berkeley_reactor_200306_planktonic_scaffold_198771_85
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

102128..103108
DNA (981bp) protein (327aa)
ATPase associated with various cellular activities AAA_3 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQJ2_9BACT
ATPase associated with various cellular activities AAA_3 {ECO:0000313|EMBL:EEF57917.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ATPase
berkeley_reactor_200306_planktonic_scaffold_198771_86
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

103176..104150
DNA (975bp) protein (325aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQJ3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57918.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_198771_87
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

104383..104814
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQJ4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57919.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_198771_88
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

104811..105884
DNA (1074bp) protein (358aa)
von Willebrand factor type A n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQJ5_9BACT
von Willebrand factor type A {ECO:0000313|EMBL:EEF57920.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
Displaying items 61-90 of 297 in total

View Taxonomy