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berkeley_reactor_200306_planktonic_scaffold_198771_16

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: 20663..24133

Top 3 Functional Annotations

View all annotations
Value Algorithm Source
PAS/PAC sensor hybrid histidine kinase (EC:2.7.13.3) similarity KEGG
DB: KEGG
  • Identity: 52.4
  • Coverage: 506.0
  • Bit_score: 520
  • Evalue 9.10e-145
two-component hybrid sensor and regulator n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017458BF similarity UNIREF
DB: UNIREF100
  • Identity: 47.1
  • Coverage: 1061.0
  • Bit_score: 904
  • Evalue 6.10e-260
Multi-sensor hybrid histidine kinase {ECO:0000313|EMBL:EEF61118.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 55.0
  • Coverage: 509.0
  • Bit_score: 560
  • Evalue 3.00e-156

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 3471
ATGAAAGAAAAAGTTAAATCGCCGGCCGGCGGCTGGCCGGAACAAGTCGCGGCGCTCGTTCGCACCCTGGATGAGACGCAGCAGCGGCTGCTGGAGCTCGCCCGGAATCATCCGGAGGCGCAGGCGGCGGCGGCCAGACTGGGCTTGCTGCCGGAGCCGGTGCGCGAAAAGCTCCGGCAAAGCGAGGAACGCTTCAATCAACTGGCCAACAACATCACGGACGTCTTCTGGATCCGCTCGGCGGATTTGAAACAGCTTTATTATGTCAGCCCCGCCTTTGAAAAGGTCTGGGGCCGGCCGGCGGAGGCGTTGTATTCTCACCCGGAGAAATGGGTGGACTTCATTCATCCGGAGGACCGACAGCGCGTTCAGCAGGCCTTTGACGGACTGGCGGGCGGGGCGGCGGCGCTGGACATCGAGTATCGCATTTTGTGGCCCAACGGCGAAATTCGCTGGATTCGCGCGCGCGGGTTCAAGGTGCGGGATGAACGCGGCCTCGTAATCCGCCTGACGGGCATCATCACGGACATCACCGAACGCAAGCACGCCGAATCGGCGTTGCGGGAAAGCGAGGAGCGGTTTTCCGGGGCGTTCCATCATGCTCCCATCGGCGTGGCGCTGGTGGCGCCCGACGGCCACTGGCTCAAGGTCAACCGCGCCCTGTGCCAGTTGCTGGGATACTCGGAGGCGGAATTGCTGGCCCGCACGTTTCAGGAACTCACGCATCCCGATGACCTGGCGGCGAGCCTGGAGTTTGTGCGCCGGGCGCTGGCCGGCGGCATTCCGGGCTACCAGATGGAGAAACGCTACATTCACAAGGACGGGCAGTTCATCACGATCCTGTTGAGTGTGTCGCTGGTGCGCGACGATGCCGGGCAGCCGCTTTATTTTATTTCCCAGATTCAAGACATCACGGAACGCAAGCAGGCGGAATTGATGCTGTCGCGCACCAATCGCGCCCTGCAAATGCTGACCAGCATCAACGAACGATTGATCCGCACGGCGGACGAGCGCAGCCTGCTCGCGGAGACCTGTCGCGTGGCGGTGAACATCGGCGGCTATTGCATGGCCTGGGTGGGTTACGCCCGGGAGGACGAGGCGCACACCATCGAACCGATGGCCTTTGCGGGCGCGGAAAACGGGTATCTGTCCAACATCAAACTTTCCTGGTCGGAGGCGACCCCGGGCGGGCGCGGTCCGGCGGGGCAGGCGATCCGCAGCGGCCTGCCGGTGGTGTGCGACGACATCACCGCCGCCGGCCACGCGTTCGCCTGGCAGGAGGAGGCGCGGCGGCGCGATTACCGGGGCGTCATCTGCCTGCCGTTGCGGGACGGCGAGGCGAAACGCACCTTCGGCCTGCTGGCCCTGTATTCGGCCACGGTGAACCGGGTGGATCAAATTGAGATCAAGCTGTTGCAGGATCTGGCGGATGACCTGGCGTTTGGCATCTGCCACCTGCGGTCGCAGAACGAAAACAAGCGGATACAGTCCGCCGTGTTGCAGGTGGCCGCCGGGGTTTCGGCCAGCACCGGCACGGAGTTTTTTCAGCAACTGGTGCGCAGCATGGCCGGAGCGCTGGAGGCCAGGGCCGGATTCGTTTCCCAATTGCAGCCGGGCGAACCCGCCATGGCCCGCACCATCGCGGCGGTGGTGGGCGGCGAGACCATGAAGAATTTCAGCTACGAAATCACCGGCACGCCCTGCGAAGGGCTGCTGACGGCGGATGAATGCGTCATCGCCGAGAAAGCCAGCGAGCGCTTCCCCCGCGCCGCCAATCTCGCCGCGCTCGGGGGCCAGGCGTATGTGGGCCGGCGCCTGCTGAATTCCAAGGGCGAGGTGCTGGGCCAGTTGTTTGTGCTGTTCGACAAGCCGCTGCGGCAAATTGGTTTCGTCACCTCCACCCTGCAAATTTTCGCCGCCCGGGCCGCGGCGGAACTCGAACGGCAGCAGGCGGACTGGCAGGTGCGCGAGCAGGCGGCGCTGCTGGACGCCGCCTCCGACGGCATCATTCTCAAGGACATGCATGACCGCATTTTGTATTGGAACCGCGGCGCGCGGCAAATTTACGGCTGGACGGCGGAGGAGGTGATCGGCAAAACATCCGGCGAATTGCTCGCCGCCGAACCCGAGGCGTATGCGGCCGCGAAACGGGAATTGCTGCAAAACGGCTTCTGGCGCGGTGAAATGCTGCGGCGCGCCAAGGACGGCGCGTTGATCACCGTGGAAGCGCACTGGACGCTGGTGCATGACCAGGAGGGACAGCCCAAATCCATTCTGGCCATCAATACCGACATCACCGAACGCAAGAAACTCGAAACCCAGTTCCTGCGCGTGCAGCGCATGGAGAGCATCGGCACGCTGGCGGGGGGCATCGCGCATGATTTGAACAACGTGCTCGCGCCGATTTTGATGTCGGTCCACATGCTCCAGGAAACTAGCACCAGCGAGGAGGACCAGAAACTGCTGACCGCGCTGAAAGCCAGCGCCCTGCGCGGCGCGGAATTGATCAAACAAGTGCTGGCGTTCGCGCGCGGCACCGAGGGACGCCGCGTGCCGATCCAGTTGGTGCATATCATCCAGGACATTCAAATCATCGTGCGCGACACGTTTCCCAAGAGCATTGAATTCGCCTTTCAACGTCCCCGCGAACTCTGGCCCGTCACCGGCAATCCCACGCAGTTGCACCAGGTGTTCATGAACCTGTGTGTCAATTCCCGCGACGCGATGCCCGCCGGCGGCCGGCTGGAAATCAGCCTGGAAAATGTGCAAATGGATGAGATTTACGCCGGCCTCAGCGGCGAAGTGAAATCCGGCCCCTACGTCCGCGTCACCGTGTCCGACACGGGAGTCGGGATTTCCAAGGAAATTCAAGCCCAGATTTTCGACCCGTTTTTCACCACCAAGGAAATCGGCAAAGGCACCGGTTTGGGATTATCCACCGTGCAAAGCATTGTCAAAAGCCACGGCGGATTCATTGATGTCACCAGCCGCCCCGACAAGGGCACGCAATTCAAAGTGTATCTGCCGGCCCATCCCGAGGCCCCGGCCGCCGAGGCGGACCCGACGAAACCGGCCGCGCTGCATCGCGGCGCCAACCGGTTGGTGCTGGTGGTGGATGACGAGGACAGCATCCGGGCGGTCACCGAGAAAATTTTGAAAAAATTCGGCTATCGCGTGCTGCTCGCGGCCAACGGCGCGGAAGCCGTTTCCCTTTTCGCCCAGCATCGCGGCGAGATTGCCCTGGTGTTTACGGACATGGCCATGCCCGTCATGGACGGTCCGTCCGCCATCGCCGCGCTGCGGGCCATTGATCCGCACGTTAAAATCATCGGCTGCAGCGGCCACGCCTCCACCGGCCGCGTCGCCAACATCGCCGAATGCGGCCTCAAATATTTCATCCACAAACCGTATTCGGCCGAAACCATGCTGAAAACGTTCGATGAGGCGCTCGCCGAGCCGGCACCGACGTGA
PROTEIN sequence
Length: 1157
MKEKVKSPAGGWPEQVAALVRTLDETQQRLLELARNHPEAQAAAARLGLLPEPVREKLRQSEERFNQLANNITDVFWIRSADLKQLYYVSPAFEKVWGRPAEALYSHPEKWVDFIHPEDRQRVQQAFDGLAGGAAALDIEYRILWPNGEIRWIRARGFKVRDERGLVIRLTGIITDITERKHAESALRESEERFSGAFHHAPIGVALVAPDGHWLKVNRALCQLLGYSEAELLARTFQELTHPDDLAASLEFVRRALAGGIPGYQMEKRYIHKDGQFITILLSVSLVRDDAGQPLYFISQIQDITERKQAELMLSRTNRALQMLTSINERLIRTADERSLLAETCRVAVNIGGYCMAWVGYAREDEAHTIEPMAFAGAENGYLSNIKLSWSEATPGGRGPAGQAIRSGLPVVCDDITAAGHAFAWQEEARRRDYRGVICLPLRDGEAKRTFGLLALYSATVNRVDQIEIKLLQDLADDLAFGICHLRSQNENKRIQSAVLQVAAGVSASTGTEFFQQLVRSMAGALEARAGFVSQLQPGEPAMARTIAAVVGGETMKNFSYEITGTPCEGLLTADECVIAEKASERFPRAANLAALGGQAYVGRRLLNSKGEVLGQLFVLFDKPLRQIGFVTSTLQIFAARAAAELERQQADWQVREQAALLDAASDGIILKDMHDRILYWNRGARQIYGWTAEEVIGKTSGELLAAEPEAYAAAKRELLQNGFWRGEMLRRAKDGALITVEAHWTLVHDQEGQPKSILAINTDITERKKLETQFLRVQRMESIGTLAGGIAHDLNNVLAPILMSVHMLQETSTSEEDQKLLTALKASALRGAELIKQVLAFARGTEGRRVPIQLVHIIQDIQIIVRDTFPKSIEFAFQRPRELWPVTGNPTQLHQVFMNLCVNSRDAMPAGGRLEISLENVQMDEIYAGLSGEVKSGPYVRVTVSDTGVGISKEIQAQIFDPFFTTKEIGKGTGLGLSTVQSIVKSHGGFIDVTSRPDKGTQFKVYLPAHPEAPAAEADPTKPAALHRGANRLVLVVDDEDSIRAVTEKILKKFGYRVLLAANGAEAVSLFAQHRGEIALVFTDMAMPVMDGPSAIAALRAIDPHVKIIGCSGHASTGRVANIAECGLKYFIHKPYSAETMLKTFDEALAEPAPT*