ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_207894_2

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: 2969..3598

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAV3_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 49.0
  • Coverage: 206.0
  • Bit_score: 207
  • Evalue 8.40e-51
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EEF63138.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 49.0
  • Coverage: 206.0
  • Bit_score: 207
  • Evalue 1.20e-50
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 46.5
  • Coverage: 198.0
  • Bit_score: 191
  • Evalue 2.30e-46

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 630
ATGGCACATTCGTCCGACGAACTGATTCCGACGCGGGCAACGCTGATCCTGCGTTTGAAGGACTGGCGGGATCAGGCCAGCTGGCAGGAGTTTTTCGACACTTACTGGCGGCTGATTTACGGCGTGGCCGTCAAGCGCGGGTTGACCGACACGGAAGCGCAGGAGGTGGTTCAGGAAACCATGGTTTCCGTGGCGAAACACATGCCCGACTTCAAATATGATCCGGCCATCGGCTCCTTCAAGGCGTGGTTGCTGAACATGACCCGCTGGCGCATCGCCGACCAGATCCGCCTCCGCCGGCCGGCGGCTGAATACCACGAAACCACGGATGCCGCCGATCCCGCCGGACTTGCGGACGGCACGCCGATTGCCGCCGCGCAGCCGGACTTCGACCGGCTCTGGGACAAGGAATGGGAAAGAAACCTGCTGGACGTGGCGGTGGAAAAGGCGCGCCGCCGCCTGGACCCGAAGCAATACCAGATTTTCGATTTCTACGTGAACAAGGAGTGGGCGCCCGAACGGATCGCGCAGACCTTTGCCATTTCGGTCAATCAGGTTTACCTCGCGAAACATCGCGTGACCGACGCCATCAAGCACGAGGTGGAGCGATTAAAAACCGAGATGGTTTGA
PROTEIN sequence
Length: 210
MAHSSDELIPTRATLILRLKDWRDQASWQEFFDTYWRLIYGVAVKRGLTDTEAQEVVQETMVSVAKHMPDFKYDPAIGSFKAWLLNMTRWRIADQIRLRRPAAEYHETTDAADPAGLADGTPIAAAQPDFDRLWDKEWERNLLDVAVEKARRRLDPKQYQIFDFYVNKEWAPERIAQTFAISVNQVYLAKHRVTDAIKHEVERLKTEMV*