ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_220752_81

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(96842..97708)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IQK1_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 56.3
  • Coverage: 293.0
  • Bit_score: 309
  • Evalue 2.20e-81
RNA polymerase sigma24 factor similarity KEGG
DB: KEGG
  • Identity: 56.4
  • Coverage: 291.0
  • Bit_score: 308
  • Evalue 1.00e-81
RNA polymerase sigma24 factor {ECO:0000313|EMBL:AHF92308.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 56.4
  • Coverage: 291.0
  • Bit_score: 308
  • Evalue 5.20e-81

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Opitutaceae bacterium TAV5 → Opitutales → Opitutae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 867
ATGATCGAATCCTTCAACGCGCATAGCGGCCAGTTGTTCGGCATCGCCTATCGGATGCTGGGCAGCGTGGCCGAGGCGGACGACCTCGTGCAGGAGACGTGGCTGCGCTGGCAGAAGCAGGATTTGGAAAAAGTGTCCTCGCCCAAAGCTTGGCTGATTTCCACGATCACGCGGCTGTGCATTGACCAACTGCGTTCCGCGCGGCGCCAGCGTGAGGAATATTACGGCGTCTGGCTGCCGGAACCGCTGGTGGAAAACGCGCCCGCGTCGCCGGAAAATTCGGCGATGCTCGCGGAGTCGTTGACGATGGCGTTCATGCTGTTGCTTGAAACGCTCGATCCGGTGGAACGCGCGGTCTTTGTGCTGCGCGAAGTGTTCGATTACGACTACGCGGACATCGCCGCCATCGTGGGCAAGAGCGAAGCGAACTGTCGTCAGATCGTGCGGCGATCCAAACTGCAACTGGCCACGCCGCCCGTGACGACCACTCCGAACGAGGCCGCGCGGCGCGTGGTGGAGAAGTTCATGGCCGCCGCGGCGGGTGGCGAAGTGCGCGACTTGCTGGCTTTGCTGACCGCCGATGCAACGTTGTATTCCGACGGCGGCGGACGGGTTTCCGCGGCGGGACGGCCGATTCACAGCGCGGATCACATCAGTCGGTTCTTCGTCGGCATTCGCGATCGTCAGCCGGCGGCTGTGGCGTTGCGCTTCGTGGCCATCAACGGCCGCCCGGGCGTGTTGATGAGCAGCGGCGGACATATTTTCAACGTGGTTTCGTTCGACCTGGACGGCGAACGAGTTCGCGCCATTTACATCGTGCGCAATCCGGAAAAGTTGAAACACCTGCCGTTCGTGGTGAGCAACTGA
PROTEIN sequence
Length: 289
MIESFNAHSGQLFGIAYRMLGSVAEADDLVQETWLRWQKQDLEKVSSPKAWLISTITRLCIDQLRSARRQREEYYGVWLPEPLVENAPASPENSAMLAESLTMAFMLLLETLDPVERAVFVLREVFDYDYADIAAIVGKSEANCRQIVRRSKLQLATPPVTTTPNEAARRVVEKFMAAAAGGEVRDLLALLTADATLYSDGGGRVSAAGRPIHSADHISRFFVGIRDRQPAAVALRFVAINGRPGVLMSSGGHIFNVVSFDLDGERVRAIYIVRNPEKLKHLPFVVSN*