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berkeley_reactor_200306_planktonic_scaffold_220752

Search features with annotation key words

Displaying items 61-90 of 373 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_220752_61
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(78053..79129)
DNA (1077bp) protein (359aa)
SMF family protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XI17_9BACT
SMF family protein {ECO:0000313|EMBL:EEF60510.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
DNA processing protein DprA
berkeley_reactor_200306_planktonic_scaffold_220752_62
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

79237..80100
DNA (864bp) protein (288aa)
Glycosyl transferase family 2 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMC4_9BACT
Glycosyl transferase family 2 {ECO:0000313|EMBL:EEF58966.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Glycosyl transferase family 2
berkeley_reactor_200306_planktonic_scaffold_220752_63
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(80112..81425)
DNA (1314bp) protein (438aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMC3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58965.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
polysaccharide biosynthesis protein
berkeley_reactor_200306_planktonic_scaffold_220752_64
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(81526..82653)
DNA (1128bp) protein (376aa)
Peptidase dimerisation domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMC2_9BACT
Peptidase dimerisation domain protein {ECO:0000313|EMBL:EEF58964.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase
berkeley_reactor_200306_planktonic_scaffold_220752_65
unknown

Not on your lists

comp(82718..83470)
DNA (753bp) protein (251aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_220752_66
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

83625..84443
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKI4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59654.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_220752_67
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(84516..85664)
DNA (1149bp) protein (383aa)
Aminotransferase class V n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBW2_9BACT
Aminotransferase class V {ECO:0000313|EMBL:EEF62430.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
csdA; Selenocysteine lyase/cysteine desulfurase
berkeley_reactor_200306_planktonic_scaffold_220752_68
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(85721..86731)
DNA (1011bp) protein (337aa)
Type II secretion system protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBW3_9BACT
Type II secretion system protein {ECO:0000313|EMBL:EEF62431.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
type II secretory pathway protein
berkeley_reactor_200306_planktonic_scaffold_220752_69
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(86748..87080)
DNA (333bp) protein (111aa)
Thioredoxin n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBW4_9BACT
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
trxA; thioredoxin
berkeley_reactor_200306_planktonic_scaffold_220752_70
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(87084..87554)
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBW5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF62433.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_220752_71
R_OD1_Yanofskybacteria_49_25, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(87679..88011)
DNA (333bp) protein (111aa)
RNP-1 like RNA-binding protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DCN2_9BACT
RNA-binding proteins (RRM domain)
Tax=RIFCSPLOWO2_01_FULL_OD1_Yanofskybacteria_49_25_curated
berkeley_reactor_200306_planktonic_scaffold_220752_72
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(88169..89551)
DNA (1383bp) protein (461aa)
Acetyl-CoA carboxylase, biotin carboxylase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBX3_9BACT
Acetyl-CoA carboxylase, biotin carboxylase {ECO:0000313|EMBL:EEF62441.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
acetyl-CoA carboxylase, biotin carboxylase
berkeley_reactor_200306_planktonic_scaffold_220752_73
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(89584..90054)
DNA (471bp) protein (157aa)
Acetyl-CoA carboxylase, biotin carboxyl carrier protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBX4_9BACT
Acetyl-CoA carboxylase, biotin carboxyl carrier protein {ECO:0000313|EMBL:EEF62442.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
acetyl-CoA carboxylase
berkeley_reactor_200306_planktonic_scaffold_220752_74
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(90238..90678)
DNA (441bp) protein (147aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBX5_9BACT
berkeley_reactor_200306_planktonic_scaffold_220752_75
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(90702..92078)
DNA (1377bp) protein (459aa)
O-antigen polymerase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBX6_9BACT
O-antigen polymerase {ECO:0000313|EMBL:EEF62444.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_220752_76
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(92088..93113)
DNA (1026bp) protein (342aa)
DNA-directed DNA polymerase {ECO:0000313|EMBL:EEF62445.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EEF62445.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
DNA-directed DNA polymerase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBX7_9BACT
DNA polymerase III, delta' subunit
berkeley_reactor_200306_planktonic_scaffold_220752_77
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

93419..94159
DNA (741bp) protein (247aa)
Uncharacterized protein (Fragment) n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XNI8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58647.1}; Flags: Fragment;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_220752_78
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(94426..94881)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAD3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF63474.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_220752_79
Blastopirellula marina, Blastopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(94895..95914)
DNA (1020bp) protein (340aa)
Zinc-containing alcohol dehydrogenase superfamily protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZL88_9PLAN
Zinc-containing alcohol dehydrogenase superfamily protein {ECO:0000313|EMBL:EAQ82521.1}; TaxID=314230 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Blastopirellula.;" source="Blastopirellula marina DSM 3645.;"
Zn-dependent alcohol dehydrogenase
berkeley_reactor_200306_planktonic_scaffold_220752_80
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(96023..96838)
DNA (816bp) protein (272aa)
2-methylisocitrate lyase n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI0003623DA2
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
berkeley_reactor_200306_planktonic_scaffold_220752_81
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(96842..97708)
DNA (867bp) protein (289aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IQK1_9BACT
RNA polymerase sigma24 factor
RNA polymerase sigma24 factor {ECO:0000313|EMBL:AHF92308.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_220752_82
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(97713..98183)
DNA (471bp) protein (157aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
Alkylhydroperoxidase like protein, AhpD family n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IQK0_9BACT
alkylhydroperoxidase
berkeley_reactor_200306_planktonic_scaffold_220752_83
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(98264..98728)
DNA (465bp) protein (155aa)
cupin n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745D96
cupin
Cupin 2 conserved barrel domain protein {ECO:0000313|EMBL:ACB76340.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_220752_84
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(98725..99777)
DNA (1053bp) protein (351aa)
Arabinan endo-1,5-alpha-L-arabinosidase {ECO:0000256|PIRNR:PIRNR026534}; EC=3.2.1.99 {ECO:0000256|PIRNR:PIRNR026534};; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
Arabinan endo-1,5-alpha-L-arabinosidase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01Y63_SOLUE
glycoside hydrolase family protein
berkeley_reactor_200306_planktonic_scaffold_220752_85
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

comp(99925..100749)
DNA (825bp) protein (275aa)
Putative PHB depolymerase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7B2_9BACT
poly(3-hydroxybutyrate) depolymerase-like protein
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
berkeley_reactor_200306_planktonic_scaffold_220752_86
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(100778..102229)
DNA (1452bp) protein (484aa)
DEAD/DEAH box helicase domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIC3_9BACT
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:EEF60384.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
RNA helicase
berkeley_reactor_200306_planktonic_scaffold_220752_87
Crocosphaera watsonii, Crocosphaera, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

102316..103041
DNA (726bp) protein (242aa)
DnaJ-class molecular chaperone CbpA n=2 Tax=Crocosphaera watsonii RepID=G5J5P7_CROWT
DnaJ-class molecular chaperone CbpA {ECO:0000313|EMBL:CCQ49538.1}; TaxID=423474 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Crocosphaera.;" source="Crocosphaera watsonii WH 8502.;"
dnaJ3; heat shock protein Hsp40
berkeley_reactor_200306_planktonic_scaffold_220752_88
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(103120..103677)
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZNL4_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB74448.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_220752_89
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(103714..104706)
DNA (993bp) protein (331aa)
Type II site-specific deoxyribonuclease (EC:3.1.21.4)
Putative O-methyltransferase n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6AYC2_9BACT
Putative O-methyltransferase {ECO:0000313|EMBL:EIQ00014.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
berkeley_reactor_200306_planktonic_scaffold_220752_90
GWF2_Lentisphaerae_57_35_curated, Lentisphaerae, Bacteria

Not on your lists

comp(104706..106097)
DNA (1392bp) protein (464aa)
Putative O-methyltransferase id=2964220 bin=GWF2_Lentisphaerae_57_35 species=Opitutaceae bacterium TAV1 genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
hypothetical protein
Tax=GWF2_Lentisphaerae_57_35_curated
Displaying items 61-90 of 373 in total

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