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berkeley_reactor_200306_planktonic_scaffold_220752_121

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: 141282..142493

Top 3 Functional Annotations

Value Algorithm Source
Efflux transporter, RND family, MFP subunit n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XB34_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 59.4
  • Coverage: 374.0
  • Bit_score: 443
  • Evalue 2.30e-121
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:EEF62719.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 59.4
  • Coverage: 374.0
  • Bit_score: 443
  • Evalue 3.20e-121
acrA; cation/multidrug efflux system, membrane-fusion protein AcrA similarity KEGG
DB: KEGG
  • Identity: 57.9
  • Coverage: 387.0
  • Bit_score: 430
  • Evalue 4.30e-118

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1212
ATGAATTGGACCAAAACAAAATATTTTTCCCGACCGGGAATTGGAACCAGGATCGCGGGCGCCGCCGGCGGGCTGGCGCTGCTGCTGACGGCGGGTTGTGGCGGAAAACCGCAGACCGCCGCCGCGCCGCCGCCGCCGGAAGTGGGGGTCGTCACCATTCAAACCCGGGCGCTGCCCATCACCACGGACCTGCCCGGGCGCATTGATCCGGTGCGGACGGCGGAAGTGCGGGCGCGCGTGGCCGGCATTTTGTTGAAACAAGTTTTCAAGGAAGGGTCGGATGTGCGGGAGGGCGACACGCTGTTCCAGATTGATCCCGCGCCGCTGCAGGCCCGGCTCGACAGCGCCCAGGCCGCGCTGGCCAAGGCCGAAGCCAATGTCGTCCAGGCGCAGTCCCAGGCGGAACGCGATGAAAAACTGGTGAAAATCCGGGCGGTCAGCCAGCAGGAATATGACAACGCCAAATCCGCCGCCCAGCAGGGCCAGGCGGACGTGCTGGTGGCGAAGGCGGCGGTGGAAACGGCTTCGCTGAACCTGGGTTACGCCACCGTCACCGCGCCCATCTCCGGCCGCATCGGCCGGGCGTTGGTGACCGAAGGCGCCTTGGTCGGCCAGGATACCGCCACCGAACTGGCCGTCATTCAGCAGCTCGACCCGATTTATTTTGATTTCACCGAGTCCAGCACCGAGGGATTGAAACTCTGGCGCGCGTTTCGCAGCGGACAGCTCAAAAGTGTCTCGGCCAACGAAGCCCAGGTCACGCTGCTGCTCGATGACGGCACCACGTATTCGCATCCGGGCAAACTGCTGTTCTCGGATGTCACCGTGGACCCGACCACCGGCATGATCACGTTGCGCGCGAAATTTCCGAACCCCGACCATTTGCTGCTGCCGGGCATGTTTGCGCATGTGCGGCTGGAACAGGCGATGGACAACGCGGCCATCACCGTGCCGCAGCGCGGCGTCACCTACGGCCCCAGCGGCGAACCGACCGTGATGCTGGTGAACACGAACGACGAAGTGGTGCAGCAGCCGGTGGCGGTGCGTTCGGCGGAGGGGAATCAATGGATCATCACCGCGGGCCTGAAAACGGGGGACCGCGTCGTGGTGTCCGGCCTGCAAAAAATCCAACCGGGCATGAAGGTGAAACCCGTGCAGTTCGCGGCGGGTGCCACGAACGCGGCGCCGGACGAAGCTGACCACAACGAATAA
PROTEIN sequence
Length: 404
MNWTKTKYFSRPGIGTRIAGAAGGLALLLTAGCGGKPQTAAAPPPPEVGVVTIQTRALPITTDLPGRIDPVRTAEVRARVAGILLKQVFKEGSDVREGDTLFQIDPAPLQARLDSAQAALAKAEANVVQAQSQAERDEKLVKIRAVSQQEYDNAKSAAQQGQADVLVAKAAVETASLNLGYATVTAPISGRIGRALVTEGALVGQDTATELAVIQQLDPIYFDFTESSTEGLKLWRAFRSGQLKSVSANEAQVTLLLDDGTTYSHPGKLLFSDVTVDPTTGMITLRAKFPNPDHLLLPGMFAHVRLEQAMDNAAITVPQRGVTYGPSGEPTVMLVNTNDEVVQQPVAVRSAEGNQWIITAGLKTGDRVVVSGLQKIQPGMKVKPVQFAAGATNAAPDEADHNE*