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berkeley_reactor_200306_planktonic_scaffold_208745_23

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(16829..18253)

Top 3 Functional Annotations

Value Algorithm Source
Sigma-54 interaction domain family id=4559125 bin=GWF2_Verrucomicrobia_51_19 species=Verrucomicrobiae bacterium DG1235 genus=unknown taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Verrucomicrobia_51_19 organism_group=Verrucomicrobia organism_desc=Good + similarity UNIREF
DB: UNIREF100
  • Identity: 58.0
  • Coverage: 457.0
  • Bit_score: 530
  • Evalue 1.70e-147
two component, sigma54 specific, Fis family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 54.6
  • Coverage: 491.0
  • Bit_score: 497
  • Evalue 2.60e-138
Tax=GWF2_Verrucomicrobia_51_19_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 58.0
  • Coverage: 457.0
  • Bit_score: 530
  • Evalue 2.30e-147

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Taxonomy

GWF2_Verrucomicrobia_51_19_curated → Opitutae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1425
ATGGCCATCGAAAAAGTCATTGTTTTGGAAGACGAGCAAGTCGTCCGCGAACATTTGGAAACCTATCTGCGCCGTTGCCGCTATGATGTCGCCTCGACATCCACGCTGGCCGGCGCCCGCGATTATCTCCAGCGCGACACGTTTGACATTTTATTTCTCGATCTCCGGCTGCCGGACGGGGACGGCACGGAACTGCTCAAGGAAATCCAGGCCCGGCCCAGCAAACCGCTGGTCATCATCACCACCGGGTTTGGCTCCGTGGAATCCGCCGTCGAGTGCATGAAGAGCGGCGCGTTCGATTACCTCATCAAACCGTATTCCACCGAGCAGATTTCGTTTGCGTTGAAGAAGGCGGAGGATTTTTCGCAGTTGTTGAAGGTCAGCCGTTACCTCAGCGGCAGCGAATCGGCCAGCACGGAATTCGAACTGCTGGGCAGCAGTCCGGCCATGGAACGGGTCCGGCAGCTCATTCGCAAGGTGGCCCGCACCCAGGCCACGGTGCTGATCCAGGGCGAAAGCGGCACGGGCAAAGAAGTGATTGCGCGCGCGCTTTACCAGGAAAGTTCCCGCACGGAAGGCCCCTTCATCAAGGTCAATTGCGCCGCCGTCCCGGAAAACCTGATCGAAAGCGAATTTTTCGGGCATGAGAAAGGCGCGTTCACCGGCGCGTTGAACAAGCGTGAAGGCCGGTTTGAACTGGCCCACGGCGGCACGATTTTGCTGGATGAAATCAGCGAAATTTCGCCGAGCGTGCAGGCCAAGCTGCTGCGGGTGTTGCAGGAACGCGAATTCGAGCGCGTCGGGGGCAACCGCCCCATCAAGGTGGATGTCCGCGTGATCGCCACCACCAACCGCCATCTGGAACAAAGCGTCGAAAAGAAGGAGTTCCGGCAGGATTTGTTCTTCCGTCTGAACGTCGTTCCCATTCACGTGCCCGCGCTGCGCGAACGCCGCGATGATATTCCGCAACTGGCCCGGTCCTTCATGCGGCGCAAAAGCCGCCAGCACGGCGTCCACGTCAAAGACTTCACCAAAGAGGCGTTGGAAGCGCTCCAGGCGCATCCCTGGCCGGGCAATGTGCGGGAATTGATGAATGTCGTGGAACGGGCGGTGATTTTGTGCGACGACGGCGGCATGCTGGATGTGGAGCATCTTGGCCTGGGCAGCGCCCCGCAGCCGCCCGCAGTTCCATCGGCCGCGCCGGCGCCGGCGGCGGAAGGCGGAAACAATGAATTTCCCACGCTGGATGAATTGGAACGAAAACACATCCTGGCCGTTTTGGAGCATTGCAAGGGCAACCGCACCCACGCGGCCAGGCTGCTGAATGTCAGCATCCGCACCTTGCGCAACAAGCTGCATGAATACAACGGCACTTCGCCGCAGGCGGAAGAGGAAGAGGCCGAACTTTCGGCGGCCAAAGCCTGA
PROTEIN sequence
Length: 475
MAIEKVIVLEDEQVVREHLETYLRRCRYDVASTSTLAGARDYLQRDTFDILFLDLRLPDGDGTELLKEIQARPSKPLVIITTGFGSVESAVECMKSGAFDYLIKPYSTEQISFALKKAEDFSQLLKVSRYLSGSESASTEFELLGSSPAMERVRQLIRKVARTQATVLIQGESGTGKEVIARALYQESSRTEGPFIKVNCAAVPENLIESEFFGHEKGAFTGALNKREGRFELAHGGTILLDEISEISPSVQAKLLRVLQEREFERVGGNRPIKVDVRVIATTNRHLEQSVEKKEFRQDLFFRLNVVPIHVPALRERRDDIPQLARSFMRRKSRQHGVHVKDFTKEALEALQAHPWPGNVRELMNVVERAVILCDDGGMLDVEHLGLGSAPQPPAVPSAAPAPAAEGGNNEFPTLDELERKHILAVLEHCKGNRTHAARLLNVSIRTLRNKLHEYNGTSPQAEEEEAELSAAKA*