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berkeley_reactor_200306_planktonic_scaffold_208745

Search features with annotation key words

Displaying items 1-30 of 93 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_208745_1
unknown

Not on your lists

comp(153..1034)
DNA (882bp) protein (294aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_208745_2
unknown

Not on your lists

comp(1039..1344)
DNA (306bp) protein (102aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_208745_3
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(1462..2544)
DNA (1083bp) protein (361aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AB-629-E09 RepID=UPI0003700548
type III secretion protein
Type III secretion protein {ECO:0000313|EMBL:AHF92956.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_208745_4
uncultured Desulfobacterium sp., Desulfobacterium, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2649..3416)
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AB-629-E09 RepID=UPI000371C475
Flagellar biosynthetic protein fliR {ECO:0000256|RuleBase:RU003842}; TaxID=201089 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfobacterium; environmental samples.;" source="uncultured Desulfobacterium sp.;"
flagellar biosynthetic protein FliR
berkeley_reactor_200306_planktonic_scaffold_208745_5
RBG_16_Spirochaete_67_19_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(3463..3732)
DNA (270bp) protein (90aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AB-629-E09 RepID=UPI00037371F1
flagellar biosynthesis protein FliQ
Tax=RBG_16_Spirochaete_67_19_curated
berkeley_reactor_200306_planktonic_scaffold_208745_6
CG_Verruco_01, Verrucomicrobia, Bacteria

Not on your lists

comp(3736..4548)
DNA (813bp) protein (271aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AB-629-E09 RepID=UPI000376D0F3
fliP; flagellar biosynthesis protein FliP
Tax=CG_Verruco_01
berkeley_reactor_200306_planktonic_scaffold_208745_7
unknown

Not on your lists

comp(4549..5013)
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AB-629-E09 RepID=UPI000364671F
berkeley_reactor_200306_planktonic_scaffold_208745_8
RLO_RIF02_62_27, RIF2, Bacteria

Not on your lists

comp(5037..5312)
DNA (276bp) protein (92aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AB-629-E09 RepID=UPI000368642C
flagellar motor switch protein FliN
Tax=RIFCSPLOWO2_12_FULL_RIF02_62_27_curated
berkeley_reactor_200306_planktonic_scaffold_208745_9
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(5319..6290)
DNA (972bp) protein (324aa)
Flagellar motor switch protein FliM n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZR35_OPITP
flagellar motor switch protein FliM
Flagellar motor switch protein FliM {ECO:0000313|EMBL:ACB73702.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_208745_10
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(6296..6826)
DNA (531bp) protein (177aa)
Flagellar basal body-associated protein FliL n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZR36_OPITP
flagellar basal body-associated protein FliL
Flagellar basal body-associated protein FliL {ECO:0000313|EMBL:ACB73703.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_208745_11
Carboxydothermus hydrogenoformans, Carboxydothermus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6839..7684)
DNA (846bp) protein (282aa)
Flagellar basal-body rod protein FlgG n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=Q3ADD6_CARHZ
flgG; flagellar basal-body rod protein FlgG
Flagellar basal-body rod protein FlgG {ECO:0000313|EMBL:ABB14776.1}; TaxID=246194 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Carboxydothermus.;" source="Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 /; Z-2901).;"
berkeley_reactor_200306_planktonic_scaffold_208745_12
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7705..8133)
DNA (429bp) protein (143aa)
Flagellar hook capping protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWF2_ALIAD
flagellar hook capping protein
Flagellar hook capping protein {ECO:0000313|EMBL:EED08833.1}; Flags: Precursor;; TaxID=543302 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alicyclobacillus acidocaldarius LAA1.;"
berkeley_reactor_200306_planktonic_scaffold_208745_13
unknown

Not on your lists

comp(8138..9757)
DNA (1620bp) protein (540aa)
Uncharacterized protein n=1 Tax=Eimeria necatrix RepID=U6MQS1_9EIME
psrP; cell wall surface anchored protein
berkeley_reactor_200306_planktonic_scaffold_208745_14
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(9757..10371)
DNA (615bp) protein (205aa)
Putative uncharacterized protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JK41_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:EDY82089.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
berkeley_reactor_200306_planktonic_scaffold_208745_15
Halobacteroides halobius, Halobacteroides, Halanaerobiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10368..10838)
DNA (471bp) protein (157aa)
Flagellar export protein FliJ n=1 Tax=Halobacteroides halobius (strain ATCC 35273 / DSM 5150 / MD-1) RepID=L0K8D3_HALHC
flagellar export protein FliJ
Flagellar export protein FliJ {ECO:0000313|EMBL:AGB40629.1}; TaxID=748449 species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halobacteroidaceae; Halobacteroides.;" source="Halobacteroides halobius (strain ATCC 35273 / DSM 5150 / MD-1).;"
berkeley_reactor_200306_planktonic_scaffold_208745_16
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(10854..12227)
DNA (1374bp) protein (458aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AB-629-E09 RepID=UPI00036CC580
flagellar protein export ATPase FliI
Flagellar protein export ATPase FliI {ECO:0000313|EMBL:ACB73709.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_208745_17
BJP_08E140C01_Clostridiales_46_19, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12224..12808)
DNA (585bp) protein (195aa)
hypothetical protein, partial n=1 Tax=Verrucomicrobia bacterium SCGC AB-629-E09 RepID=UPI00037D2A3B
hypothetical protein
Tax=BJP_08E140C01_Clostridiales_46_19
berkeley_reactor_200306_planktonic_scaffold_208745_18
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(12795..13844)
DNA (1050bp) protein (350aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AB-629-E09 RepID=UPI00035ED5E7
Flagellar motor switch protein FliG {ECO:0000313|EMBL:EDY85233.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
flagellar motor switch protein FliG
berkeley_reactor_200306_planktonic_scaffold_208745_19
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(13849..15471)
DNA (1623bp) protein (541aa)
Flagellar M-ring protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IM58_9BACT
flagellar M-ring protein FliF
Flagellar M-ring protein {ECO:0000256|PIRNR:PIRNR004862}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_208745_20
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(15484..15837)
DNA (354bp) protein (118aa)
Flagellar hook-basal body complex protein FliE n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZR48_OPITP
flagellar hook-basal body complex subunit FliE
Flagellar hook-basal body complex protein FliE {ECO:0000256|HAMAP-Rule:MF_00724, ECO:0000256|SAAS:SAAS00116622}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_208745_21
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(15847..16275)
DNA (429bp) protein (143aa)
Flagellar basal-body rod protein FlgC n=2 Tax=unclassified Opitutaceae RepID=H1IM56_9BACT
flagellar basal-body rod protein FlgC
Flagellar basal-body rod protein FlgC {ECO:0000256|RuleBase:RU362062}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_208745_22
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(16281..16661)
DNA (381bp) protein (127aa)
Flagellar basal body rod protein FlgB n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZR50_OPITP
flagellar basal-body rod protein FlgB
Flagellar basal body rod protein FlgB {ECO:0000256|PIRNR:PIRNR002889}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_208745_23
GWF2_Verrucomicrobia_51_19_curated, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(16829..18253)
DNA (1425bp) protein (475aa)
Sigma-54 interaction domain family id=4559125 bin=GWF2_Verrucomicrobia_51_19 species=Verrucomicrobiae bacterium DG1235 genus=unknown taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Verrucomicrobia_51_19 organism_group=Verrucomicrobia organism_desc=Good +
two component, sigma54 specific, Fis family transcriptional regulator
Tax=GWF2_Verrucomicrobia_51_19_curated
berkeley_reactor_200306_planktonic_scaffold_208745_24
unknown

Not on your lists

comp(18268..18738)
DNA (471bp) protein (157aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_208745_25
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(18864..20204)
DNA (1341bp) protein (447aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZRR2_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB73755.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_208745_26
unknown

Not on your lists

comp(20201..20896)
DNA (696bp) protein (232aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_208745_27
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

20965..21873
DNA (909bp) protein (303aa)
Putative signal transduction protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZRQ9_OPITP
signal transduction protein
Putative signal transduction protein {ECO:0000313|EMBL:ACB73752.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_208745_28
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

22123..22680
DNA (558bp) protein (186aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZRZ7_OPITP
ECF subfamily RNA polymerase sigma-24 factor
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACB74673.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_208745_29
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

22741..24984
DNA (2244bp) protein (748aa)
Serine/threonine protein kinase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZRZ8_OPITP
serine/threonine protein kinase
Serine/threonine protein kinase {ECO:0000313|EMBL:ACB74674.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_208745_30
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

25431..26129
DNA (699bp) protein (233aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKC83648.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
Displaying items 1-30 of 93 in total

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