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berkeley_reactor_200306_planktonic_scaffold_208745

Search features with annotation key words

Displaying items 61-90 of 93 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_208745_61
Caldithrix abyssi, Caldithrix, Bacteria

Not on your lists

72357..73040
DNA (684bp) protein (228aa)
Putative uncharacterized protein n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XYK5_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:EHO39823.1}; TaxID=880073 species="Bacteria; Caldithrix.;" source="Caldithrix abyssi DSM 13497.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_208745_62
RLO_RIF02_62_27, RIF2, Bacteria

Not on your lists

73033..76107
DNA (3075bp) protein (1025aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2AH82_9BACT
type I restriction endonuclease, HsdR family
Tax=RIFCSPLOWO2_12_FULL_RIF02_62_27_curated
berkeley_reactor_200306_planktonic_scaffold_208745_63
RBG_13_ACD39_59_9_curated, ACD39, Bacteria

Not on your lists

comp(76127..78082)
DNA (1956bp) protein (652aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037DBC61
alpha-L-arabinofuranosidase
Tax=RBG_13_ACD39_59_9_curated
berkeley_reactor_200306_planktonic_scaffold_208745_64
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(78111..80570)
DNA (2460bp) protein (820aa)
Arabinan endo-1,5-alpha-L-arabinosidase {ECO:0000313|EMBL:EEF60159.1}; EC=3.2.1.99 {ECO:0000313|EMBL:EEF60159.1};; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Arabinan endo-1,5-alpha-L-arabinosidase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIT2_9BACT
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_208745_65
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(80698..82836)
DNA (2139bp) protein (713aa)
serine protease (EC:3.4.21.-)
Ig domain protein group 2 domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XB04_9BACT
Ig domain protein group 2 domain protein {ECO:0000313|EMBL:EEF63189.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_208745_66
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(82873..83619)
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIT1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60158.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
prepilin-type N-terminal cleavage/methylation domain
berkeley_reactor_200306_planktonic_scaffold_208745_67
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(84003..86213)
DNA (2211bp) protein (737aa)
Serine/threonine protein kinase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZRZ8_OPITP
serine/threonine protein kinase
Serine/threonine protein kinase {ECO:0000313|EMBL:ACB74674.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_208745_68
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(86295..86864)
DNA (570bp) protein (190aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZRZ7_OPITP
ECF subfamily RNA polymerase sigma-24 factor
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACB74673.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_208745_69
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(87090..87902)
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XR46_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57659.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_208745_70
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(87921..89135)
DNA (1215bp) protein (405aa)
Putative SAM-dependent methyltransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPC8_9BACT
Putative SAM-dependent methyltransferase {ECO:0000313|EMBL:EEF58268.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
SAM-dependent methyltransferase
berkeley_reactor_200306_planktonic_scaffold_208745_71
unknown

Not on your lists

comp(89273..89647)
DNA (375bp) protein (125aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_208745_72
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

89872..90321
DNA (450bp) protein (150aa)
Putative signal transduction protein with CBS domains n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMQ1_9BACT
Putative signal transduction protein with CBS domains {ECO:0000313|EMBL:EEF58826.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
putative signal transduction protein
berkeley_reactor_200306_planktonic_scaffold_208745_73
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(90457..91101)
DNA (645bp) protein (215aa)
Rhomboid family protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CVC9_9BACT
Rhomboid family protein {ECO:0000313|EMBL:EDY21371.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
rhomboid-like protein
berkeley_reactor_200306_planktonic_scaffold_208745_74
unknown

Not on your lists

comp(91285..91614)
DNA (330bp) protein (110aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_208745_75
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

91835..94102
DNA (2268bp) protein (756aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZV89_OPITP
berkeley_reactor_200306_planktonic_scaffold_208745_trna_1
unknown

Not on your lists

94160..94245
DNA (86bp)
transferRNA Ser
berkeley_reactor_200306_planktonic_scaffold_208745_76
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

94429..96780
DNA (2352bp) protein (784aa)
Nitric-oxide reductase , quinol-dependent n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JZ51_9BACT
Nitric-oxide reductase , quinol-dependent {ECO:0000313|EMBL:ELR72472.1}; TaxID=1237149 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtechensis AK7.;"
nitric-oxide reductase subunit B
berkeley_reactor_200306_planktonic_scaffold_208745_77
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

97690..99126
DNA (1437bp) protein (479aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBE9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF62834.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_208745_78
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

99232..100281
DNA (1050bp) protein (350aa)
Uncharacterized protein n=2 Tax=unclassified Opitutaceae RepID=I6B2B1_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIQ01403.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
berkeley_reactor_200306_planktonic_scaffold_208745_79
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

100287..103760
DNA (3474bp) protein (1158aa)
Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IL77_9BACT
IMP dehydrogenase {ECO:0000313|EMBL:AHF92195.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
IMP dehydrogenase
berkeley_reactor_200306_planktonic_scaffold_208745_80
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

103854..106355
DNA (2502bp) protein (834aa)
Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47BP2_DECAR
Uncharacterized protein {ECO:0000313|EMBL:ETX08959.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_208745_81
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

106352..107227
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00037FACD0
Transglutaminase {ECO:0000313|EMBL:KJB97064.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
transglutaminase
berkeley_reactor_200306_planktonic_scaffold_208745_82
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

107231..108058
DNA (828bp) protein (276aa)
Transglutaminase domain-containing protein n=2 Tax=unclassified Opitutaceae RepID=H1IYB7_9BACT
transglutaminase
Transglutaminase {ECO:0000313|EMBL:AHF89085.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_208745_83
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

108164..108757
DNA (594bp) protein (198aa)
GPR1/FUN34/yaaH family protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CXH3_9BACT
GPR1/FUN34/yaaH family protein {ECO:0000313|EMBL:EDY20971.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
GPR1/FUN34/yaaH
berkeley_reactor_200306_planktonic_scaffold_208745_84
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(108847..110394)
DNA (1548bp) protein (516aa)
bioA; adenosylmethionine-8-amino-7-oxononanoate transaminase (EC:2.6.1.62)
Aminotransferase class-III n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGM3_9BACT
Aminotransferase class-III {ECO:0000313|EMBL:EEF61074.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_208745_85
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(110387..111577)
DNA (1191bp) protein (397aa)
8-amino-7-oxononanoate synthase {ECO:0000256|SAAS:SAAS00087543}; EC=2.3.1.47 {ECO:0000256|SAAS:SAAS00087543};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
8-amino-7-oxononanoate synthase (EC:2.3.1.47)
8-amino-7-oxononanoate synthase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGM2_9BACT
berkeley_reactor_200306_planktonic_scaffold_208745_86
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(111794..113038)
DNA (1245bp) protein (415aa)
Amidohydrolase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGM1_9BACT
Amidohydrolase {ECO:0000313|EMBL:EEF61072.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ssnA; Cytosine deaminase or related metal-dependent hydrolase
berkeley_reactor_200306_planktonic_scaffold_208745_87
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(113041..113391)
DNA (351bp) protein (117aa)
Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGM0_9BACT
Sigma 54 modulation protein/ribosomal protein S30EA {ECO:0000313|EMBL:EEF61071.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ribosomal subunit interface protein
berkeley_reactor_200306_planktonic_scaffold_208745_88
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

113513..115024
DNA (1512bp) protein (504aa)
RNA polymerase, sigma 54 subunit, RpoN n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGP4_9BACT
RNA polymerase, sigma 54 subunit, RpoN {ECO:0000313|EMBL:EEF61095.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
RNA polymerase subunit sigma-54
berkeley_reactor_200306_planktonic_scaffold_208745_89
Nocardia nova, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

115095..115331
DNA (237bp) protein (79aa)
Putative uncharacterized protein n=1 Tax=Thioalkalivibrio thiocyanoxidans ARh 4 RepID=G4DDU2_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHH21655.1}; TaxID=1415166 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia nova SH22a.;"
Displaying items 61-90 of 93 in total

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