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berkeley_reactor_200306_planktonic_scaffold_208745_87

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(113041..113391)

Top 3 Functional Annotations

Value Algorithm Source
Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGM0_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 64.7
  • Coverage: 116.0
  • Bit_score: 157
  • Evalue 4.20e-36
Sigma 54 modulation protein/ribosomal protein S30EA {ECO:0000313|EMBL:EEF61071.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 64.7
  • Coverage: 116.0
  • Bit_score: 157
  • Evalue 5.90e-36
ribosomal subunit interface protein similarity KEGG
DB: KEGG
  • Identity: 32.7
  • Coverage: 113.0
  • Bit_score: 70
  • Evalue 1.90e-10

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 351
ATGAAATTGATCATTGTGCCGCACAACGTTACTCTGACTAAAGCCATTGAAGATCATATCGTGGCCAAGATTGACAAGTTGGACCACATGGACCAACGCATTGTGGACGCACGGGTTATCGTCGAACATGATCATACCAAGGTGCCGGAAAAGCAGTTCAGCTGCTCCATCCGTCTGGCCGTGCGGGGACCGGACCTGTTCGCGCGGGACGTGGAAAACGATTTGTATGCGGCCATTGACGCGGCGGCCAAAAAGATCGAACAACAAATCCGCAAACGCCACAGCAAGCACAAGGCGACCAAGCACAAGGTGGCCGCCCGCACCAAACGCACGCGCCAGGAAAAAGACTGA
PROTEIN sequence
Length: 117
MKLIIVPHNVTLTKAIEDHIVAKIDKLDHMDQRIVDARVIVEHDHTKVPEKQFSCSIRLAVRGPDLFARDVENDLYAAIDAAAKKIEQQIRKRHSKHKATKHKVAARTKRTRQEKD*