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berkeley_reactor_200306_planktonic_scaffold_208745_88

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: 113513..115024

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma 54 subunit, RpoN n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGP4_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 69.6
  • Coverage: 504.0
  • Bit_score: 684
  • Evalue 5.60e-194
RNA polymerase, sigma 54 subunit, RpoN {ECO:0000313|EMBL:EEF61095.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 69.6
  • Coverage: 504.0
  • Bit_score: 684
  • Evalue 7.90e-194
RNA polymerase subunit sigma-54 similarity KEGG
DB: KEGG
  • Identity: 48.7
  • Coverage: 509.0
  • Bit_score: 474
  • Evalue 1.90e-131

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1512
ATGGGACCTGGCTTACAACTCTCGCAACGACTCACCCAGTCGCTGGTGCTGGCTCCCCAGCTCCAGCAATCGCTGGCCCTGCTGCAGGCGCCCACCCTGGAGCTCAAGGCGCTGGTCGAACAGGAGCTCCAGCAAAATCCCGTGCTGGAGGAGGTTGCCGACCAGGACATGGAATTGCGCGAAAAGTCCGCCGACGATCGCGAGGGCGACGAACCGGCCGCGCCCGAACCGACCGACTTTGCGGAGCCGCCCGAGGATGTGCAATTCGATTCCGCCACGGAAAAGCCGTCCGCCGAGCCGGTGGATGATTTCCAGGCCGAGTTTGAAAAGCTGGTGCAAATGGACCAGGACTGGCGCGACCACTTTTCCCAGACGAACACCGTCGTCCGCTCCTCCGCCGATGACGAGGAAAAACGGGAGTTCATGTTCAACTCCATCACCGCCGAAACGTCGCTGGCCCAACACCTCATGGACCAGGTGCGGGACACCGAGTTGAGCGGCGAGGAACAAGCCGTGGCCGAACTCCTGATCGGCAACATAGACGATTACGGCTATCTTATGGCCACGGTCGAGGAACTGGCGGTCACCACCAATCTGCCGGGCGACCAGATTTCAAACGTTTTAAAAATCATCCAGGGATTTGATCCGGCGGGCGTCGGCGCGCGGGATTTGCGGGAATGCCTGCTGCTTCAACTGGAGCGCACCGGCAAACAGGAATCGCTGGAATACCGCATCGTGCGCGACCACATGGACGCGCTCGGCAAACGGCGCATCCCCGAAATCGCGCGTGGCACCGGCCAGTCCGTGGAAGATGTCCAGGAGGCGCTCACCCGCATCAGCCGGCTGGACCCGCGGCCCGGCCGGGCGTTTCTTCCCGCCGTTGAACAATACGTCGCGCCGGAGGTGTTTGTGCAGCGCAACGGCGACGATTACACCGTCACCACCAACGACGAACAGATTCCGCACCTGCGCATCAGCAATGTTTACAAGGATTTGATGTCCGGCGGCGCGAATGACGCCGAGGTGAAGAATTACATCCGCGAAAAAATCCGCGCCGGCAAATTTCTCATCAAGAGCCTGCACCAGCGCCAGCAGACCATCGCCAATATTGGCCGCGAGATCGTCAAGCGTCAGCGCGAATTCATGGACAAAGGCGTGGCGCATCTTAAGCCCATGACGATGGCGCAGGTGGCTGAAGTGGTGGGCGTGCATGAAACCACAGTCAGCCGGGCGGTTTCCGGCAAATACATTGAAACGCCGCAGGGCGTGTTTGAAATGAAGTTTTTCTTCACCGCCGGCCTGCAAACCGCCAGCGGCAGCGACGTTTCCAACACCAGCGTCAAGGACATGATCGCGGACATCTTCAAAAACGAAAATCCGTCCAAGCCGCTGTCTGATCAGGAAGTGGTCAAGATGCTGACTGCCAAAGGAATCAACATTGCGCGTCGCACGGTGGCCAAATATCGGGACGAGCTGGGCATTTTGCCCTCCAATCTGCGGAAGGTTTATTGA
PROTEIN sequence
Length: 504
MGPGLQLSQRLTQSLVLAPQLQQSLALLQAPTLELKALVEQELQQNPVLEEVADQDMELREKSADDREGDEPAAPEPTDFAEPPEDVQFDSATEKPSAEPVDDFQAEFEKLVQMDQDWRDHFSQTNTVVRSSADDEEKREFMFNSITAETSLAQHLMDQVRDTELSGEEQAVAELLIGNIDDYGYLMATVEELAVTTNLPGDQISNVLKIIQGFDPAGVGARDLRECLLLQLERTGKQESLEYRIVRDHMDALGKRRIPEIARGTGQSVEDVQEALTRISRLDPRPGRAFLPAVEQYVAPEVFVQRNGDDYTVTTNDEQIPHLRISNVYKDLMSGGANDAEVKNYIREKIRAGKFLIKSLHQRQQTIANIGREIVKRQREFMDKGVAHLKPMTMAQVAEVVGVHETTVSRAVSGKYIETPQGVFEMKFFFTAGLQTASGSDVSNTSVKDMIADIFKNENPSKPLSDQEVVKMLTAKGINIARRTVAKYRDELGILPSNLRKVY*