ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_208745_73

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(90457..91101)

Top 3 Functional Annotations

Value Algorithm Source
Rhomboid family protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CVC9_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 53.8
  • Coverage: 221.0
  • Bit_score: 238
  • Evalue 3.50e-60
Rhomboid family protein {ECO:0000313|EMBL:EDY21371.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 53.8
  • Coverage: 221.0
  • Bit_score: 238
  • Evalue 4.90e-60
rhomboid-like protein similarity KEGG
DB: KEGG
  • Identity: 48.4
  • Coverage: 223.0
  • Bit_score: 193
  • Evalue 3.60e-47

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Chthoniobacter flavus → Chthoniobacter → Spartobacteria → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 645
ATGCTTCCCATCTCCGACGAAAATCCCACACGCCGGTTTCCGCTGGTGACGGTGCTGCTCATCGCGGCGAACATCGCCGTGTTCGCCGCGTGGCAGATGCGCCTCGGCCTGGCGCAATCCGTCACATGGGGCGGATTGGTTCCGCACGAGTTGCACCCGGTTTCCGCCGCGGGAATCCGCCACCTGTTCACCTCCATGTTCATGCACGCCGGCATTTTGCACCTGCTGGGCAATCTGTGGTTTTTATGGATTTTCGGCGACAACGTGGAGGACGACATCGGGCGCATTCGTTTTCTGCTGCTTTATCTGGCCAGCGGCGTCGCGGCAGCGGCCGCGCACGTGGCGCTGAACGTCCAATCCGCCCTGCCCTTGGTTGGAGCCAGCGGTGCCATCAGCGGGGTGCTGGGCGCGTATCTGGTGCTGCATCCGGTCGCGCGCGTGAAAACGCTGGTCTTCATCCGGTTTATTCGGATTCCCGCCTGGATTTTCTTGATTCTCTGGATCGGCCTCCAAGTCTTTGCCCTGTCCCAAACTCTCAAGGGAAAAAATGCCGGCATCGCCTACGCGGCGCACGTTGGCGGATTTGTGGCCGGAATGATTCTTGCCATCGCAATCCGGCCCCGACAAAACACACGGCGCGGCTGA
PROTEIN sequence
Length: 215
MLPISDENPTRRFPLVTVLLIAANIAVFAAWQMRLGLAQSVTWGGLVPHELHPVSAAGIRHLFTSMFMHAGILHLLGNLWFLWIFGDNVEDDIGRIRFLLLYLASGVAAAAAHVALNVQSALPLVGASGAISGVLGAYLVLHPVARVKTLVFIRFIRIPAWIFLILWIGLQVFALSQTLKGKNAGIAYAAHVGGFVAGMILAIAIRPRQNTRRG*