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berkeley_reactor_200306_planktonic_scaffold_228973_22

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: 20138..20695

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQJ1_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 55.0
  • Coverage: 180.0
  • Bit_score: 204
  • Evalue 8.20e-50
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EEF57916.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 55.0
  • Coverage: 180.0
  • Bit_score: 204
  • Evalue 1.10e-49
putative RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 37.0
  • Coverage: 173.0
  • Bit_score: 124
  • Evalue 2.30e-26

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 558
ATGGGCGAATCGGATGAACAACACACGTGGGTGGAGCGCAGTCGGAACGGCGACCACGCGGCCTTTGCGGCATTGATTCGTGAATATCAACCGATGATCCATTCGCTGACCTATCGCATGACCGGCTCGGTGGCGGACTGCCAGGATTTGTCGCAGGAAACGTTTATTCGCGCGTATCAACAACTGGATTCCTTCAACGGCACGGCCAAGTTTTCCTCGTGGCTTTACCGCATCGCCGTCAATGCCTGCCTCGACTGGAAGCGCCGCGAAACGCGCCGTTCCCAATTGCACGCCCGCTGGAATGATGTCCATGAAACCGGTCATTCCGCCACGGACAACAGCGACGGACTGGACGAGACCGGCCGGCAAGTGCAGGCGGCCTTGCTGAAGCTCCCGGACAAACAGCGGGCCGCCATCGTGCTGACCGTTTATGGCGGGCACAACCACGCCGAGGCGGCAAAAATTCTGGGCTGTTCCGAAACGACGGTTTCCTGGCGCGTGTTTGCGGCGCGCCGGAAGTTGAAAACCATTTTAAGCCGGAAAGGAGAAACGTCATGA
PROTEIN sequence
Length: 186
MGESDEQHTWVERSRNGDHAAFAALIREYQPMIHSLTYRMTGSVADCQDLSQETFIRAYQQLDSFNGTAKFSSWLYRIAVNACLDWKRRETRRSQLHARWNDVHETGHSATDNSDGLDETGRQVQAALLKLPDKQRAAIVLTVYGGHNHAEAAKILGCSETTVSWRVFAARRKLKTILSRKGETS*