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berkeley_reactor_200306_planktonic_scaffold_228973

Search features with annotation key words

Displaying items 1-30 of 117 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_228973_1
unknown

Not on your lists

comp(2..82)
DNA (81bp) protein (27aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_228973_2
unknown

Not on your lists

comp(236..346)
DNA (111bp) protein (37aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_228973_3
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(592..2043)
DNA (1452bp) protein (484aa)
Sulfatase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBD5_9BACT
Sulfatase {ECO:0000313|EMBL:EEF62820.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
arylsulfatase A family protein
berkeley_reactor_200306_planktonic_scaffold_228973_4
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

2241..2606
DNA (366bp) protein (122aa)
Putative transcriptional regulator id=2823583 bin=GWF2_Lentisphaerae_50_93 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
ArsR family transcriptional regulator
Tax=GWF2_Verrucomicrobia_62_7_curated
berkeley_reactor_200306_planktonic_scaffold_228973_5
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

2617..3474
DNA (858bp) protein (286aa)
arsenite S-adenosylmethyltransferase n=1 Tax=Desulfovibrio desulfuricans RepID=UPI0003B6C369
type 11 methyltransferase
Tax=GWF2_Verrucomicrobia_62_7_curated
berkeley_reactor_200306_planktonic_scaffold_228973_6
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3512..4606
DNA (1095bp) protein (365aa)
Arsenical-resistance protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZXF2_OPITP
arsenical-resistance protein
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
berkeley_reactor_200306_planktonic_scaffold_228973_7
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

4826..5275
DNA (450bp) protein (150aa)
Protein tyrosine phosphatase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XS27_9BACT
Protein tyrosine phosphatase {ECO:0000313|EMBL:EEF57359.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
protein tyrosine phosphatase
berkeley_reactor_200306_planktonic_scaffold_228973_8
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(5314..5793)
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XET6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61800.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_228973_9
Pirellula staleyi, Pirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(6002..6631)
DNA (630bp) protein (210aa)
Oxidoreductase FAD-binding domain protein n=1 Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2QW70_PIRSD
oxidoreductase FAD-binding domain-containing protein
Oxidoreductase FAD-binding domain protein {ECO:0000313|EMBL:ADB15945.1}; TaxID=530564 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
berkeley_reactor_200306_planktonic_scaffold_228973_10
Planctopirus limnophila, Planctopirus, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(6647..7594)
DNA (948bp) protein (316aa)
Sulfoxide reductase catalytic subunit YedY {ECO:0000256|SAAS:SAAS00016472}; EC=1.8.-.- {ECO:0000256|SAAS:SAAS00016459};; TaxID=521674 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Planctopirus.;" source="Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 /; 290) (Planctomyces limnophilus).;"
Oxidoreductase molybdopterin binding protein n=1 Tax=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) RepID=D5SWI8_PLAL2
oxidoreductase molybdopterin binding protein
berkeley_reactor_200306_planktonic_scaffold_228973_11
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(7793..8740)
DNA (948bp) protein (316aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Methionyl-tRNA formyltransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIU7_9BACT
fmt; methionyl-tRNA formyltransferase
berkeley_reactor_200306_planktonic_scaffold_228973_12
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(8754..9335)
DNA (582bp) protein (194aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Adenylate kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIU8_9BACT
adenylate kinase
berkeley_reactor_200306_planktonic_scaffold_228973_13
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(9332..10237)
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIU9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60176.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_228973_14
Bacteroides finegoldii, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10397..11752)
DNA (1356bp) protein (452aa)
Alpha-galactosidase {ECO:0000256|RuleBase:RU361168}; EC=3.2.1.22 {ECO:0000256|RuleBase:RU361168};; Melibiase {ECO:0000256|RuleBase:RU361168}; TaxID=997888 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides finegoldii CL09T03C10.;"
Uncharacterized protein n=1 Tax=Bacteroides finegoldii CL09T03C10 RepID=K5CHW7_9BACE
Alpha-galactosidase precursor
berkeley_reactor_200306_planktonic_scaffold_228973_15
Desulfatibacillum alkenivorans, Desulfatibacillum, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12269..13900
DNA (1632bp) protein (544aa)
Uncharacterized protein n=1 Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=B8FJ49_DESAA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL04976.1}; Flags: Precursor;; TaxID=439235 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfatibacillum.;" source="Desulfatibacillum alkenivorans (strain AK-01).;"
berkeley_reactor_200306_planktonic_scaffold_228973_16
unknown

Not on your lists

comp(14032..14628)
DNA (597bp) protein (199aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_228973_17
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

15134..16090
DNA (957bp) protein (319aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMC1_9BACT
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:EEF58963.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
NAD-dependent epimerase/dehydratase
berkeley_reactor_200306_planktonic_scaffold_228973_18
unknown

Not on your lists

16108..16689
DNA (582bp) protein (194aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_228973_19
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(17060..18376)
DNA (1317bp) protein (439aa)
Mammalian cell entry related domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XHU5_9BACT
Mammalian cell entry related domain protein {ECO:0000313|EMBL:EEF60673.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_228973_20
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(18389..19174)
DNA (786bp) protein (262aa)
ABC transporter related-protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XHU4_9BACT
ABC transporter related-protein {ECO:0000313|EMBL:EEF60672.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ABC transporter
berkeley_reactor_200306_planktonic_scaffold_228973_21
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(19171..20031)
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XHU3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60671.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
putative ABC transporter permease
berkeley_reactor_200306_planktonic_scaffold_228973_22
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

20138..20695
DNA (558bp) protein (186aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQJ1_9BACT
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EEF57916.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
putative RNA polymerase sigma factor
berkeley_reactor_200306_planktonic_scaffold_228973_23
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

20692..21315
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQJ0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57915.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_228973_24
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

21320..25642
DNA (4323bp) protein (1441aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQI5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57910.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_228973_25
GWA2_Desulfovibrionales_65_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25649..26929
DNA (1281bp) protein (427aa)
cobalamin biosynthesis protein CobT n=1 Tax=Sandarakinorhabdus limnophila RepID=UPI0003B6C4AC
msfA; vHiSLR1, Sel1-like repeat protein
Tax=GWA2_Desulfovibrionales_65_9_curated
berkeley_reactor_200306_planktonic_scaffold_228973_26
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

27331..27900
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQI8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57913.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_228973_27
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

27914..28834
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQI7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57912.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
curli assembly protein CsgG
berkeley_reactor_200306_planktonic_scaffold_228973_28
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

28855..29784
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQI7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57912.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Curli production assembly/transport component CsgG
berkeley_reactor_200306_planktonic_scaffold_228973_29
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

29810..30739
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQI7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57912.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
curli assembly protein CsgG
berkeley_reactor_200306_planktonic_scaffold_228973_30
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(30904..31269)
DNA (366bp) protein (122aa)
Cupin 2 conserved barrel domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGN1_9BACT
Cupin 2 conserved barrel domain protein {ECO:0000313|EMBL:EEF61082.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
cupin
Displaying items 1-30 of 117 in total

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