ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_228973

Search features with annotation key words

Displaying items 31-60 of 117 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_228973_31
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(31361..32275)
DNA (915bp) protein (305aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGN2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61083.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_228973_32
unknown

Not on your lists

comp(32392..32610)
DNA (219bp) protein (73aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_228973_33
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

32760..33128
DNA (369bp) protein (123aa)
Rhodanese domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGN3_9BACT
Rhodanese domain protein {ECO:0000313|EMBL:EEF61084.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Rhodanese-like protein
berkeley_reactor_200306_planktonic_scaffold_228973_34
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


33210..33425
DNA (216bp) protein (72aa)
50S ribosomal protein L35 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIW8_9BACT
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
rpmI; ribosomal protein L35
berkeley_reactor_200306_planktonic_scaffold_228973_35
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


33463..33846
DNA (384bp) protein (128aa)
50S ribosomal protein L20 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIW7_9BACT
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
rplT; 50S ribosomal protein L20
berkeley_reactor_200306_planktonic_scaffold_228973_36
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


33944..35014
DNA (1071bp) protein (357aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIW6_9BACT
phenylalanyl-tRNA synthetase
berkeley_reactor_200306_planktonic_scaffold_228973_37
RBG_13_RIF03_48_7_curated, RIF3, Bacteria

Not on your lists

35064..35288
DNA (225bp) protein (75aa)
hypothetical protein
Tax=RBG_13_RIF03_48_7_curated
berkeley_reactor_200306_planktonic_scaffold_228973_38
RBG_13_RIF03_48_7_curated, RIF3, Bacteria

Not on your lists

35270..35662
DNA (393bp) protein (131aa)
PilT protein domain protein n=1 Tax=Leptonema illini DSM 21528 RepID=H2CJB4_9LEPT
hypothetical protein
Tax=RBG_13_RIF03_48_7_curated
berkeley_reactor_200306_planktonic_scaffold_228973_39
unknown

Not on your lists

35659..35865
DNA (207bp) protein (69aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_228973_40
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

35966..36676
DNA (711bp) protein (237aa)
bstVIR; type-2 restriction enzyme BstVI (R.BstVI) (Type II restriction enzyme BstVI) (Endonuclease BstVI) (EC:3.1.21.4)
Type-2 restriction enzyme BstVI (R.BstVI) (Type II restriction enzyme BstVI) (Endonuclease BstVI) n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MMJ7_9BACT
Tax=RBG_16_Nitrospirae_64_22_curated
berkeley_reactor_200306_planktonic_scaffold_228973_41
RIFOXYC12_FULL_TA06_54_24_curated, TA06, Bacteria

Not on your lists

36694..37614
DNA (921bp) protein (307aa)
Methyltransferase id=4788693 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
methyltransferase
Tax=RIFOXYC12_FULL_TA06_54_24_curated
berkeley_reactor_200306_planktonic_scaffold_228973_42
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37651..38403
DNA (753bp) protein (251aa)
Carbonic anhydrase n=1 Tax=Polaromonas sp. CF318 RepID=J3D349_9BURK
Carbonic anhydrase {ECO:0000313|EMBL:EJL83556.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
sulfate permease
berkeley_reactor_200306_planktonic_scaffold_228973_43
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

38400..40889
DNA (2490bp) protein (830aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
hypothetical protein n=1 Tax=unclassified Verrucomicrobia (miscellaneous) RepID=UPI00036ACDC0
berkeley_reactor_200306_planktonic_scaffold_228973_44
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(41127..42290)
DNA (1164bp) protein (388aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLT4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59191.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_228973_45
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(42395..43540)
DNA (1146bp) protein (382aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLT5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59192.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_228973_46
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(43724..44407)
DNA (684bp) protein (228aa)
ABC transporter related-protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLT6_9BACT
ABC transporter related-protein {ECO:0000313|EMBL:EEF59193.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ABC transporter ATP-binding protein
berkeley_reactor_200306_planktonic_scaffold_228973_47
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(44539..44832)
DNA (294bp) protein (98aa)
Glycoside hydrolase family 13 domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPM1_9BACT
Glycoside hydrolase family 13 domain protein {ECO:0000313|EMBL:EEF58249.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
glycoside hydrolase family 13 domain protein
berkeley_reactor_200306_planktonic_scaffold_228973_48
RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated, Bacteroidetes, Bacteria

Not on your lists

comp(44885..45853)
DNA (969bp) protein (323aa)
Uncharacterized protein n=1 Tax=Xenococcus sp. PCC 7305 RepID=L8M2X5_9CYAN
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated
berkeley_reactor_200306_planktonic_scaffold_228973_49
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

comp(46238..48241)
DNA (2004bp) protein (668aa)
Zn-dependent protease with chaperone function n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DMF9_SINAD
Zn-dependent protease with chaperone function
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
berkeley_reactor_200306_planktonic_scaffold_228973_50
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(48351..48962)
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6ATT9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EIP98430.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
LemA family protein
berkeley_reactor_200306_planktonic_scaffold_228973_51
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(49061..50206)
DNA (1146bp) protein (382aa)
ErfK/YbiS/YcfS/YnhG family protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJG6_9BACT
ErfK/YbiS/YcfS/YnhG family protein {ECO:0000313|EMBL:EEF60027.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_228973_52
RIFOXYD12_FULL_Ignavibacteria_36_8_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(50262..50954)
DNA (693bp) protein (231aa)
Putative cytidylate kinase id=2622124 bin=GWF2_Ignavibacteria_35_20 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
cytidylate kinase
Tax=RIFOXYD12_FULL_Ignavibacteria_36_8_curated
berkeley_reactor_200306_planktonic_scaffold_228973_53
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(51047..51892)
DNA (846bp) protein (282aa)
Aminodeoxychorismate lyase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIW9_9BACT
Aminodeoxychorismate lyase {ECO:0000313|EMBL:EEF60196.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
class IV aminotransferase
berkeley_reactor_200306_planktonic_scaffold_228973_54
uncultured Verrucomicrobiales bacterium HF0200_39L05, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(51952..53547)
DNA (1596bp) protein (532aa)
aminodeoxychorismate synthase subunit I (EC:2.6.1.85)
Anthranilate/para-aminobenzoate synthases component I n=1 Tax=uncultured Verrucomicrobiales bacterium HF0200_39L05 RepID=E0XUQ7_9BACT
Anthranilate/para-aminobenzoate synthases component I {ECO:0000313|EMBL:ADI18148.1}; TaxID=710997 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; environmental samples.;" source="uncultured Verrucomicrobiales bacterium HF0200_39L05.;"
berkeley_reactor_200306_planktonic_scaffold_228973_55
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(53659..54339)
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIX5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60202.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_228973_56
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

54679..55650
DNA (972bp) protein (324aa)
Putative dehydrogenase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744D76
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding {ECO:0000313|EMBL:EDY16384.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
D-isomer specific 2-hydroxyacid dehydrogenase
berkeley_reactor_200306_planktonic_scaffold_228973_57
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(55672..56607)
DNA (936bp) protein (312aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002D99D2B
PfkB domain protein {ECO:0000313|EMBL:EDY16203.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
sugar kinase
berkeley_reactor_200306_planktonic_scaffold_228973_58
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

comp(56604..57974)
DNA (1371bp) protein (457aa)
Xylose transporter n=1 Tax=Blastopirellula marina DSM 3645 RepID=A4A2Q8_9PLAN
xylE; xylose transporter
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
berkeley_reactor_200306_planktonic_scaffold_228973_59
Bacteroides sp. 4_1_36, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(57971..59968)
DNA (1998bp) protein (666aa)
Uncharacterized protein n=4 Tax=Bacteroides RepID=A7V0S1_BACUN
Uncharacterized protein {ECO:0000313|EMBL:EFV26157.1}; TaxID=457393 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 4_1_36.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_228973_60
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

comp(60321..62486)
DNA (2166bp) protein (722aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0003811AAE
beta-fructosidase, levanase/invertase
Tax=CG_Arma_01
Displaying items 31-60 of 117 in total

View Taxonomy