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berkeley_reactor_200306_planktonic_scaffold_228973

Search features with annotation key words

Displaying items 61-90 of 117 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_228973_61
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62784..67658)
DNA (4875bp) protein (1625aa)
Outer membrane autotransporter barrel domain protein n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8KZX4_9GAMM
Membrane protein {ECO:0000313|EMBL:KER72684.1}; TaxID=292 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia (Pseudomonas cepacia).;"
outer membrane autotransporter barrel domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_228973_62
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(67703..68614)
DNA (912bp) protein (304aa)
Type II secretory pathway pseudopilin PulG-like protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCZ5_9BACT
Type II secretory pathway pseudopilin PulG-like protein {ECO:0000313|EMBL:EEF62341.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_228973_63
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

68722..69852
DNA (1131bp) protein (377aa)
GntR family transcriptional regulator n=1 Tax=Schlesneria paludicola RepID=UPI00029A1CA3
Regulatory protein GntR HTH {ECO:0000313|EMBL:EDY22146.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
GntR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_228973_64
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(70134..73217)
DNA (3084bp) protein (1028aa)
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent {ECO:0000313|EMBL:EEF60205.1}; EC=1.17.4.1 {ECO:0000313|EMBL:EEF60205.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIX8_9BACT
ribonucleoside-diphosphate reductase
berkeley_reactor_200306_planktonic_scaffold_228973_65
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

73768..74943
DNA (1176bp) protein (392aa)
Aminotransferase class I and II n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XP88_9BACT
Aminotransferase class I and II {ECO:0000313|EMBL:EEF58339.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
aspartate/tyrosine/aromatic aminotransferase
berkeley_reactor_200306_planktonic_scaffold_228973_66
unknown

Not on your lists

75147..76880
DNA (1734bp) protein (578aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_228973_67
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(76957..77469)
DNA (513bp) protein (171aa)
hypothetical protein id=24515465 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Putative uncharacterized protein {ECO:0000313|EMBL:EDY80441.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_228973_68
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(77460..80120)
DNA (2661bp) protein (887aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-N20 RepID=UPI0003699861
helicase
Helicase ATP-dependent domain protein {ECO:0000313|EMBL:ACB76636.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_228973_69
Pelodictyon phaeoclathratiforme, Pelodictyon, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists


comp(80120..81223)
DNA (1104bp) protein (368aa)
DNA-binding/iron metalloprotein/AP endonuclease (EC:3.4.24.57)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000255|HAMAP-Rule:MF_01445}; EC=2.3.1.234 {ECO:0000255|HAMAP-Rule:MF_01445};; N6-L-threonylcarbamoyladenine synthase {ECO:0000255|HAMAP-Rule:MF_01445}; Short=t(6)A synthase {ECO:0000255|HAMAP-Rule:MF_01445};; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000255|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000255|HAMAP-Rule:MF_01445}; TaxID=324925 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Pelodictyon.;" source="Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1).;"
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) RepID=TSAD_PELPB
berkeley_reactor_200306_planktonic_scaffold_228973_70
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(81223..82536)
DNA (1314bp) protein (438aa)
Carboxyl-terminal protease {ECO:0000313|EMBL:EEF58344.1}; EC=3.4.21.102 {ECO:0000313|EMBL:EEF58344.1};; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Carboxyl-terminal protease n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XP93_9BACT
ctpA-2; carboxy-terminal processing protease lipoprotein
berkeley_reactor_200306_planktonic_scaffold_228973_71
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(82555..83238)
DNA (684bp) protein (228aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XP94_9BACT
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
berkeley_reactor_200306_planktonic_scaffold_228973_72
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(83292..83504)
DNA (213bp) protein (71aa)
Translation initiation factor IF-1 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XL49_9BACT
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
translation initiation factor IF-1
berkeley_reactor_200306_planktonic_scaffold_228973_73
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(83599..83937)
DNA (339bp) protein (113aa)
RNP-1 like RNA-binding protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DCN2_9BACT
RNP-1 like RNA-binding protein {ECO:0000313|EMBL:EDY15797.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
RNP-1 like RNA-binding protein
berkeley_reactor_200306_planktonic_scaffold_228973_74
unknown

Not on your lists

comp(83934..84035)
DNA (102bp) protein (34aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_228973_75
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(84113..85843)
DNA (1731bp) protein (577aa)
Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XN50_9BACT
Single-stranded-DNA-specific exonuclease RecJ {ECO:0000313|EMBL:EEF58712.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
single-stranded-DNA-specific exonuclease RecJ
berkeley_reactor_200306_planktonic_scaffold_228973_76
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(85840..86826)
DNA (987bp) protein (329aa)
Integral membrane protein TerC n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XN51_9BACT
Integral membrane protein TerC {ECO:0000313|EMBL:EEF58713.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
integral membrane protein TerC
berkeley_reactor_200306_planktonic_scaffold_228973_77
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(86839..89349)
DNA (2511bp) protein (837aa)
Protein-export membrane protein SecD n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XN52_9BACT
Protein-export membrane protein SecD {ECO:0000313|EMBL:EEF58714.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
protein-export membrane protein SecD
berkeley_reactor_200306_planktonic_scaffold_228973_78
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(89357..89680)
DNA (324bp) protein (108aa)
preprotein translocase subunit YajC n=1 Tax=Omnitrophica bacterium SCGC AAA257-O07 RepID=UPI0003B653C5
preprotein translocase subunit YajC
Tax=GWF2_Nitrospirae_44_13_curated
berkeley_reactor_200306_planktonic_scaffold_228973_79
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


comp(89821..90432)
DNA (612bp) protein (204aa)
50S ribosomal protein L9 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFD2_9BACT
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
50S ribosomal protein L9
berkeley_reactor_200306_planktonic_scaffold_228973_80
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(90465..90917)
DNA (453bp) protein (151aa)
Single-stranded DNA-binding protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFD3_9BACT
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
single-stranded DNA-binding protein
berkeley_reactor_200306_planktonic_scaffold_228973_81
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


comp(90941..91246)
DNA (306bp) protein (102aa)
Ribosomal protein S6 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFD4_9BACT
Ribosomal protein S6 {ECO:0000313|EMBL:EEF61298.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
rpsF; ribosomal protein S6
berkeley_reactor_200306_planktonic_scaffold_228973_82
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(91243..91848)
DNA (606bp) protein (202aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFD5_9BACT
berkeley_reactor_200306_planktonic_scaffold_228973_83
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


comp(91876..92568)
DNA (693bp) protein (231aa)
50S ribosomal protein L25 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFD6_9BACT
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023358}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023360}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
berkeley_reactor_200306_planktonic_scaffold_228973_84
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(92602..93675)
DNA (1074bp) protein (358aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFD7_9BACT
berkeley_reactor_200306_planktonic_scaffold_228973_85
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(93834..95597)
DNA (1764bp) protein (588aa)
hypothetical protein n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI0003820F04
glycoside hydrolase family 39
Glycoside hydrolase family 39 {ECO:0000313|EMBL:AHG92402.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
berkeley_reactor_200306_planktonic_scaffold_228973_86
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(95802..97913)
DNA (2112bp) protein (704aa)
Xylan alpha-1,2-glucuronidase {ECO:0000256|RuleBase:RU361198}; EC=3.2.1.131 {ECO:0000256|RuleBase:RU361198};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
alpha-glucuronidase (EC:3.2.1.139)
Alpha-glucuronidase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VVK1_9GAMM
berkeley_reactor_200306_planktonic_scaffold_228973_87
Micromonospora sp. ATCC 39149, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(98082..98876)
DNA (795bp) protein (265aa)
Xylanase n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RF54_9ACTO
Xylanase {ECO:0000313|EMBL:EEP72208.1}; TaxID=219305 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. ATCC 39149.;"
putative GDSL-like lipase/acylhydrolase with Ricin-type beta-trefoil lectin domain
berkeley_reactor_200306_planktonic_scaffold_228973_88
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(98972..101320)
DNA (2349bp) protein (783aa)
Fibronectin type III domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAL1_9BACT
Chitinase
Chitinase {ECO:0000313|EMBL:AIE87663.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
berkeley_reactor_200306_planktonic_scaffold_228973_89
Streptomyces leeuwenhoekii, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(101367..101738)
DNA (372bp) protein (124aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-N20 RepID=UPI000381BEB1
Mobile element protein {ECO:0000313|EMBL:CQR59430.1}; TaxID=1437453 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces leeuwenhoekii.;"
transposase
berkeley_reactor_200306_planktonic_scaffold_228973_90
Frankia sp. CpI1-S, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(101766..102140)
DNA (375bp) protein (125aa)
transposase n=4 Tax=Prochlorothrix hollandica RepID=UPI0003453732
Transposase, IS4 family {ECO:0000313|EMBL:KJE21655.1}; TaxID=1502723 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CpI1-S.;"
putative transposase
Displaying items 61-90 of 117 in total

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