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berkeley_reactor_200306_planktonic_scaffold_228973_80

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(90465..90917)

Top 3 Functional Annotations

Value Algorithm Source
Single-stranded DNA-binding protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFD3_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 74.2
  • Coverage: 155.0
  • Bit_score: 224
  • Evalue 6.20e-56
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 74.2
  • Coverage: 155.0
  • Bit_score: 224
  • Evalue 8.70e-56
single-stranded DNA-binding protein similarity KEGG
DB: KEGG
  • Identity: 52.4
  • Coverage: 166.0
  • Bit_score: 169
  • Evalue 6.70e-40

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 453
ATGGCCAGCTTCAATAAAGTCATCCTCGTTGGGAACCTGACGCGCGATCCTGAATTGCGCTACACGCCCAAGGGGACGGCGATTGCCAAGATCGGCCTGGCGGTCAACCGCACTTGGCGGAACGAAGCCGGCGAAACGAAGGAGGAAGTGACCTTTGTGGACGTGGATGTTTTCGGCCGCACGGCGGAAAACGTCGGCCAATACATGCGCAAAGGCCGTCCGATTCTCGTTGAAGGCCGGCTGCGGCTCGACCAGTGGGACGACAAGCAAACCGGCCAGAAGCGCAGCCGCCTCGGGGTGGTTGCCGAAACCGTTCAATTTCTCGGCAGCCCGGCCGGAGGCGAAGCTGCTGGAGCTTCGGCCCCGCGGGTTTCGCGCCCGGCGGCGCCGGCGCCGGCCGCCGAGCCGGTTGAAGGCGACGGTCCGCCGGAAAGCGACGACGTTCCCTTTTGA
PROTEIN sequence
Length: 151
MASFNKVILVGNLTRDPELRYTPKGTAIAKIGLAVNRTWRNEAGETKEEVTFVDVDVFGRTAENVGQYMRKGRPILVEGRLRLDQWDDKQTGQKRSRLGVVAETVQFLGSPAGGEAAGASAPRVSRPAAPAPAAEPVEGDGPPESDDVPF*