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berkeley_reactor_200306_planktonic_scaffold_228973

Search features with annotation key words

Displaying items 91-117 of 117 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_228973_91
Pirellula staleyi, Pirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(102274..103857)
DNA (1584bp) protein (528aa)
Aldehyde Dehydrogenase n=1 Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2R2H9_PIRSD
aldehyde dehydrogenase
Aldehyde Dehydrogenase {ECO:0000313|EMBL:ADB15088.1}; TaxID=530564 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
berkeley_reactor_200306_planktonic_scaffold_228973_92
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

104243..105619
DNA (1377bp) protein (459aa)
Cytochrome bd ubiquinol oxidase subunit I n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZRX9_OPITP
cytochrome bd ubiquinol oxidase subunit I
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
berkeley_reactor_200306_planktonic_scaffold_228973_93
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

105628..106650
DNA (1023bp) protein (341aa)
cydB; cytochrome bd-I oxidase subunit II
Cytochrome bd-I oxidase subunit II id=4580863 bin=GWF2_Melioribacter_38_21 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Melioribacter_38_21 organism_group=Ignavibacteria
Tax=RBG_16_NC10_65_8_curated
berkeley_reactor_200306_planktonic_scaffold_228973_94
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(106876..107520)
DNA (645bp) protein (215aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XEI2_9BACT
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:EEF61696.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
LuxR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_228973_95
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(107595..110432)
DNA (2838bp) protein (946aa)
Histidine kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XEI3_9BACT
Histidine kinase {ECO:0000313|EMBL:EEF61697.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
two component regulator, sensor protein
berkeley_reactor_200306_planktonic_scaffold_228973_96
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

110628..112187
DNA (1560bp) protein (520aa)
Sulfotransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XA43_9BACT
Sulfotransferase {ECO:0000313|EMBL:EEF63384.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
sulfotransferase
berkeley_reactor_200306_planktonic_scaffold_228973_97
unknown

Not on your lists

112458..112598
DNA (141bp) protein (47aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_228973_98
Burkholderia multivorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(113084..120142)
DNA (7059bp) protein (2353aa)
autotransporter n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745ACF
Membrane protein {ECO:0000313|EMBL:KHS16197.1}; TaxID=87883 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia multivorans.;"
autotransporter-associated beta strand repeat family protein
berkeley_reactor_200306_planktonic_scaffold_228973_99
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(120650..121342)
DNA (693bp) protein (231aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCZ1_9BACT
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:EEF62337.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
LuxR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_228973_100
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(121352..124078)
DNA (2727bp) protein (909aa)
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCZ0_9BACT
Integral membrane sensor signal transduction histidine kinase {ECO:0000313|EMBL:EEF62336.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_228973_trna_1
unknown

Not on your lists

124337..124409
DNA (73bp)
transferRNA Ala
berkeley_reactor_200306_planktonic_scaffold_228973_101
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

124501..125286
DNA (786bp) protein (262aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XL85_9BACT
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EEF59436.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Short-chain alcohol dehydrogenase of unknown specificity
berkeley_reactor_200306_planktonic_scaffold_228973_102
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(125440..126720)
DNA (1281bp) protein (427aa)
Permease YjgP/YjgQ family protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XL84_9BACT
Permease YjgP/YjgQ family protein {ECO:0000313|EMBL:EEF59435.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
permease
berkeley_reactor_200306_planktonic_scaffold_228973_103
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(126839..130519)
DNA (3681bp) protein (1227aa)
Pectinesterase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CXX1_9BACT
Pectinesterase {ECO:0000313|EMBL:EDY21119.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_228973_104
unknown

Not on your lists

comp(130664..131500)
DNA (837bp) protein (279aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_228973_105
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(131665..132297)
DNA (633bp) protein (211aa)
Sigma-70, region 4 family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JPJ0_9BACT
Sigma-70, region 4 family {ECO:0000313|EMBL:EDY84287.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
two component transcriptional regulator, LuxR family
berkeley_reactor_200306_planktonic_scaffold_228973_106
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(132294..134396)
DNA (2103bp) protein (701aa)
Histidine kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIM8_9BACT
Histidine kinase {ECO:0000313|EMBL:EEF60291.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
histidine kinase
berkeley_reactor_200306_planktonic_scaffold_228973_107
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

comp(134418..135455)
DNA (1038bp) protein (346aa)
hypothetical protein n=1 Tax=Hymenobacter aerophilus RepID=UPI000363B103
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKC83387.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
berkeley_reactor_200306_planktonic_scaffold_228973_108
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(135815..137320)
DNA (1506bp) protein (502aa)
4-amino-4-deoxy-L-arabinose transferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAA6_9BACT
4-amino-4-deoxy-L-arabinose transferase {ECO:0000313|EMBL:EEF63447.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
arnT; 4-amino-4-deoxy-L-arabinose transferase or related glycosyltransferase of PMT family
berkeley_reactor_200306_planktonic_scaffold_228973_109
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(137317..138339)
DNA (1023bp) protein (341aa)
dpm1; dolichol-phosphate mannosyltransferase (EC:2.4.1.83)
Glycosyl transferase family 2 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAA7_9BACT
Glycosyl transferase family 2 {ECO:0000313|EMBL:EEF63448.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_228973_110
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(138475..140637)
DNA (2163bp) protein (721aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZTY2_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB75864.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_228973_111
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(140668..141516)
DNA (849bp) protein (283aa)
Cytochrome C family protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZTY3_OPITP
cytochrome C family protein
Cytochrome C family protein {ECO:0000313|EMBL:ACB75865.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_228973_112
RBG_13_Chloroflexi_46_9_curated, Chloroflexi, Bacteria

Not on your lists

comp(141535..143220)
DNA (1686bp) protein (562aa)
hypothetical protein n=1 Tax=Armatimonadetes bacterium JGI 0000077-K19 RepID=UPI0003B72528
Tax=RBG_13_Chloroflexi_46_9_curated
berkeley_reactor_200306_planktonic_scaffold_228973_113
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

143459..144373
DNA (915bp) protein (305aa)
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
berkeley_reactor_200306_planktonic_scaffold_228973_114
Chloroherpeton thalassium, Chloroherpeton, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

comp(144620..146029)
DNA (1410bp) protein (470aa)
Deoxyribodipyrimidine photo-lyase {ECO:0000313|EMBL:ACF14868.1}; EC=4.1.99.3 {ECO:0000313|EMBL:ACF14868.1};; TaxID=517418 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chloroherpeton.;" source="Chloroherpeton thalassium (strain ATCC 35110 / GB-78).;"
Deoxyribodipyrimidine photo-lyase n=1 Tax=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) RepID=B3QX58_CHLT3
deoxyribodipyrimidine photo-lyase
berkeley_reactor_200306_planktonic_scaffold_228973_115
unknown

Not on your lists

comp(146085..146555)
DNA (471bp) protein (157aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_228973_116
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(146645..146920)
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFY2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61144.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
Displaying items 91-117 of 117 in total

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