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berkeley_reactor_200306_planktonic_scaffold_228973_105

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(131665..132297)

Top 3 Functional Annotations

Value Algorithm Source
Sigma-70, region 4 family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JPJ0_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 45.4
  • Coverage: 207.0
  • Bit_score: 209
  • Evalue 2.20e-51
Sigma-70, region 4 family {ECO:0000313|EMBL:EDY84287.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 45.4
  • Coverage: 207.0
  • Bit_score: 209
  • Evalue 3.10e-51
two component transcriptional regulator, LuxR family similarity KEGG
DB: KEGG
  • Identity: 47.6
  • Coverage: 208.0
  • Bit_score: 176
  • Evalue 7.70e-42

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Taxonomy

Verrucomicrobiae bacterium DG1235 → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 633
ATGATTCGCGTTGGCATCATCGAGGACAGCCCGACCATCCGGGAAAGTCTGGCGCAGTTTGTGCAAACCGATCCGGAGTGTCGTTGTGTGTTTGCGTGCGCGACCGCCGAGGAGGCGCTGCGGGAAGTGCCGGAGCATTCGCCGGAAGTCCTGCTGGTGGACATTCAACTGCCCAAAATGTCGGGCATCGAATGCACCGCCCGGATCAAGAAATCATTTCCCCCGGTCCAGATCATCATGGTGACCGTGTATGAGGACACGGAGCGGATTTCCGCCGCCCTGCGCGCGGGCGCCTGCGGGTATTTGCTGAAGCGCTGCTCGCCGGCGGAGCTGGTGTCCGCGGTTCGCGAGGCGCAGTTGGGCGGGGTGCCAATGCCCAGGGAAATTGCGCGCAAAGTCATCGCTTCCTTTCAGCAACCGCTGGCCGCCTCGGCGGCGGTGGAGGAGCTGCGTCCCAGCGAAACCAAAATTCTGGAATTGCTGGCCGAGGGACTGGCCAACAAGGAAATTGCCGGCCGGCTCGGCTTGAGCGCGGGAACCGTGCGCTGGCACCTGGAAAATATTTACAGCAAGTTGCACGTCCATTCCCGCACGGAGGCGGTATTGAAATTTCAATCCGCCAAAATGGCCTGA
PROTEIN sequence
Length: 211
MIRVGIIEDSPTIRESLAQFVQTDPECRCVFACATAEEALREVPEHSPEVLLVDIQLPKMSGIECTARIKKSFPPVQIIMVTVYEDTERISAALRAGACGYLLKRCSPAELVSAVREAQLGGVPMPREIARKVIASFQQPLAASAAVEELRPSETKILELLAEGLANKEIAGRLGLSAGTVRWHLENIYSKLHVHSRTEAVLKFQSAKMA*