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berkeley_reactor_200306_planktonic_scaffold_253396_20

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: 20616..25991

Top 3 Functional Annotations

Value Algorithm Source
YD repeat-containing protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9X9X5_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 59.4
  • Coverage: 1680.0
  • Bit_score: 1973
  • Evalue 0.0
YD repeat-containing protein {ECO:0000313|EMBL:EEF63316.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 59.4
  • Coverage: 1680.0
  • Bit_score: 1973
  • Evalue 0.0
RHS repeat-associated core domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 33.0
  • Coverage: 1599.0
  • Bit_score: 653
  • Evalue 1.10e-184

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 5376
ATGGCTGTGCCCTTTTCGGTGATGGCACAACTCGTCGTCAGTATCCCAACATTTCCTGCCACCAATACCGTCCATCTGGATTTGTCCGGCACGGAATCCACCAACTCGCACATCATCTTTTTTACGCCGGACTTGAGCGTTCCGCGTGCCGCATGGACACGCATGACGACCGGCACCGTCGGTCAAACTTCCTTCGATTTACCGAAGCCAACCAATGATACGGCGTTCTTCGCCGCTGGCGTTGCGCCCATCAGCACACCGACAGTAGCGACACCCGTTTTCACACCCAGCGGTGGCAGCTATGCGATGCCACAGGATGTTGTTGTCACGTGCGCCACACCCGGTGCGGCAATTTATTACACGACCAACGGAGACACGCCAACAGAATCCGACACCTATATTTACAATGGCGACAGCATTTATGTGTCCGGTGTGACCACCTTGAAAGCCAAAGCATTTGCGTCGGGATACAATGACAGCGCAGTAGCGTCCGCCACCTACACCATCAATTCCGCGCCGTCCGTTTACGCCGGCGCTCAACAGATTATTTACAGTTCGCCAACAACGCTTGAAGGCGTCGTGTCAGACGACGGCCTGACTGGCGGTGGCGTCATGTTCACCAATTGGACGAAAATCAGCGGGCCGGGAACAGTGACGTTTGGCGACTCGCATCAAACCAACAGCAGCGCGAGTTTCAGCGCGGATGGCATTTATGTCCTGCAACTCGCTGTGAGCGACGGTCAATATACGAATACCAGTGAAGTGACGATTGCGCTCAATCCAACGCTTTCAGTCTCTCTTACTGCGCCGGCAGATGGTTCCACCTATACTGTTCCGACCAATATTTTACTCCAAGCAACTGCCACCAGCACGAGTGGCAGCGTGACGCAGGTCTTGTTCTACGCCAATTCAACGCTAATCGGCTCAGTCACAAATGCTCCGTTCAGTCTCAATTGGAAAAGCGTGAGTTCGGGCAATCTGGCATTGACGGCGGTTGCGGTGAGCGACGATGCGAACAACCAAAGTCTGGCATCCACGCCGGTGAACATCACGGTTAACTGGCCGACAAATGTCGGACAGGTGAATTTTGCTTCAACCGATTTGCAGATACCTGCCGCCGGTCTCCCCATTGCCGTCAACCGTGAATACAATACACAGTTTGGATCAAGCGGCAGTTTTGGGTATGACGGCAAATTGGATTACGAGGCGATCAAGATTGAAGAATCAAGTTCGCTGGCAACCGGCTGGCAAGGCACGAAAAACGGTGGTCTGACCTACATCATTCAGCCCACCACGCAACACCTCATCACCGTTAGTTTGAGTGACAGCGAAAAATATTATTTCGCGGCGCAATTGGTGTTCGACATCAGCGACAGCGCCGCTATCAACGAGTCGGTGACGCCCGACTGTTACAACTTTTTCACCGTGCATTTGGTTTGCACCCCGTTGGGACAAGGGCAATTAAGCGTGGCCGCGCCGAGTGATACGGTGGGCATGGACGATGACTTGAGCGGCTGGCAGCGGTCACTGACGGCGGTGCATTTTGATGACACAGGCTTTCCGATTAACAATTATGAGCCGAGCTTGTCAGAATTCACCTTTACCGCACCGGACGGAACCAAATACACATTCAACAGCGATGGCACCGTTGCTTCCAAGACGGATCGTAACAGTAACACTCTGTCCTATTCCAGCAGCGGCATCACCTGGTCAAATCCGAATATCGGCGCGTCCAAGCAAATCTCATTTACCCGCGACGGAAACAACCGCATCACTGAAGTGTATGACCCCATCGCGCTCAATACGTCTGGTTCACCTGTGTTGAAATATGATTACGATGGCAACGGCAACCTGACCAACGTAGCACAACTTGTTGAACGAAGTCCGGCAGTCTATGACAACACCGGTTACGCTTACACTAATGCCAGCTTCATCCACAACGTCACTGCCATTACTGACCCGCGAGGAATTGTTTCTTCTCGCTATGAATACGATTCAAGCGGACGCTTGGCGAAACAGTTTGATGCGCTTGACCGCTACACAAGTTACATTTACGACACGGCAAACCATCGGCAGATCATCACCGACCGACTCCTTCACACCACAACTCAAACCTTTACCGATTCAGGACTCCTAGCCAGCGTGAAAGACGCGGCTGGTGGCGTAACCAGCTACGGTTACGATTCGCAAGGCAGGAAAACAAGCGAGACAAATGCCGTGAATGAAACCACCAGCTACGGCTACGATGACAACGGAAACCTGGTTGCTACCACCAATAAGTTAAACAGTGCCACGAGTGCGACCTATAACAATTACGGCCAGCCCCTTGTCCAGATTGACGCACGCGACAATGGGACGACAAATGCCTACGATGATAACGGGAACCTAATTGCTGTCACAAACGCGCTCGATATTGTTACCCGTTATGGTTACGACAGCGAAGGCAATCGTATCGCAGAAACGAACGCTTATGGTTTGCCCGAACAAACCATTACCTTAAATGGTTACAACGAGTATGGCTGGCTGACAAACACAACCATCGGCACAAGCTCGACCAGCTTCACATACGATGACAATGGAAATCGAAAGACAGAAACCAAGTATCGGGCTGCGGGAGACATTCTCACCCAATGGCAATATGACGCCGCCAACCGTGTAGTTGCCACAATTGACGCCCTGAATAACACCAATTGGATATTTTACAACGGCATTGGAAAGCAGTCTGAGACAGTAGATGCCCTCAATCGCACCAATCAGTTCTTTTATGATGCTGTCGGCCTGCTGACAAACACGACGTATGCCGACGGCACGTTTGCAACCTACGAGTATGATGCCGAGGGCCACAAACAAACAGTGACAGACCAGGACCAGCACACGACCAGCTACATGTATGACGAGTTGGGACAATTGATGCGAACGACATTTGCCGACACTAACTACACAAGCACTGACTACGATAGTGCTGGACATCTGCGCAGTTCAACGCAAGTAGCGGTCAATTCGGCAGGTGGCTTGACGCCCCCGACCACTTCGGAACTCACCACCTATTACTACTACGATGGTGCCGGAAGACGCACCGCTATTACTAATGCGCTCAACCAAGGGACAACTTCTGAATACGACGCCAACGGCAATCAGACAAACATGGTTGACGCACTTGGCCGCACCAACACCTACGTTTTCGACAAACTAAACCGGGAAAAGGAAGTCATTTACCCCGACACCGCAACTGAATCGTATGGCTATGATGGATTGAATCGTAAAATAGCAGTAACCAACCAAGCTGATGTTGTTACGCGGTTCGGTTACGATGAGCTTGGCAGATTAACTGCCGTCACAAATGCGTTTGGCACCAGTCAACAGATGGTGACTCGTTATGTATATGATGCAGTCGGAGATTTATTGCAGCAGATTGACGCCCTCAATCACACGAATCAGTTTGAATACGACGCACTTGGTCGTCGAACCAAGGAGACGTTACCGGGCTTGCAATCACAGACGTTCGGCTATGACGCCGTGGGCAACCTAATTCGCCAGACGAACTTCAACAATATCGTTATTACCAATCAATACGACACTCTCAACCAAATCACGAACAAAAGTTCCGTCAATGGCTTTGAAATAGCCTATGCCTACTCACCCACAGGACAACGCACCAACATGCTAGATGCCAGCGGCACGACCAGCTACACATACGATTTACGCGACCGATTACAGACGAAAGATTCCCCGGAGGGTTTGCTTACTTACACCTACGACGGTTTTGGCAACTTGGCGACAATTCAATCATCCACCCCGAGTGGCGTTTCACTAACCTATCATTATGATGCCCTCAATCGGCTTACCAACGTCGTGGATCAACTGTCCAGTTCCACCACGTATGGTTACGATGATGTCGGTAATTTGCAGACGGTGCGATTGCCCAATAACGTCACCAATACTTACCAATACAATTCGCTGAATCGGCTGACGAATCTCACGGCAACGTCCAGCAACGGAACATTGGCAAGTTTTGCCTATAAACTTGCTCTCGCTGGCAACCGCACCAACTTGGTTGAATCCATAAATGGCATCGGCTGCACCAACGCGTGGAAATATGATTCGCTCTACCGTCTGACCAACGAAACCATCACCGCTTCAGTTGGCGGAAGCATCAGCTACAGATATGACGCGGTAGGCAATCGGACGAACCGAATCAGTTCAGTTGCTGGCATTGCCAGCCAGACATTCGCATTCAACTCCAATGACCAGCCCACAAGCGATGCCTTTGACAACAACGGTAATACCCGGACAAACAATGGGAATGTGTTCTTTTATGACGTGGAGAACCGCCTGACGAATGCCATTGTTGGCGGAACAAATGTCGTCATTGTGTATGACGGTGATGGTAACCGAGTGAAAGAGATCGTCGGTTCGACAACAAATCTTTTCTTGGTGGATGACCGAAATCCGACAGGTTATGCGCAGGTGTTGGAGGAAAAGAACATAAGCGGTGGCACGACCAACCTCGTTCGCCTCTATGCTTATGGACTAGACCTCATCAGCCAGGAAGATGCCTCGACCACGGTGCAGCACTTCTACGGGTATGACGGTAACGGCAACACCCGGTATCTAACATCCGCCAGCGGCACGGTGACGGATTCCTACGTTTACGATGCCTTTGGCGACCTCATCACCAGTAGCGGAACGACCGCCAATGTTTATCGCTACTCCGGTGAGCAATATGACCCGAACTTGGGTTTCTATTATCTCCGCGCCCGTTACCTTAATCCGAATCAGGGACGATTTATTTCACGTGATCTTTTGGCGGGAAACAAATTTGACCCATCATCTTTGCACCGTTATGCCTATGTCGCCAATAATCCTTTAAATCTTGTGGATTTATCAGGACAGGATTTTACGCTTCCATCAACTTTGAGCGGCATCACAATCGCTCTTGGACTGGCTGCACTAGACCTAGCTGTTATTGCCCAAACAAGTGTCAATTATCGGAAGTATTTTGGATTCGCTGATCGTGACCGGACAGCGGCTATTGCCCAAAATAATTTAGCCATAACGAGCTTGCAACGGATTATTAACAGTGGCGGAGACATAACATTTCAAGATCAACATTTGGGTATAGGTGGACGTTTAGGAACCATCTTGCCAGGTAGCAGTTCATTCCAAAAACTTGCAAATCTGTATGAGTCAACGGCAAATCTGGAAGGTTGGCCCTCTGCCCTTCAAGAGTGGGCAGCCCGACTTTCAACCGACGCATTCAACCCGGTTCCAATTGAAGGCAGCATAGCTGGCACACCTGAAAAAAGAGTAATCCTCGCAACTGCCCTCTTGCACCGTCAACAATCATTTGACGCATGGCTCCGGAGGAATTATTAG
PROTEIN sequence
Length: 1792
MAVPFSVMAQLVVSIPTFPATNTVHLDLSGTESTNSHIIFFTPDLSVPRAAWTRMTTGTVGQTSFDLPKPTNDTAFFAAGVAPISTPTVATPVFTPSGGSYAMPQDVVVTCATPGAAIYYTTNGDTPTESDTYIYNGDSIYVSGVTTLKAKAFASGYNDSAVASATYTINSAPSVYAGAQQIIYSSPTTLEGVVSDDGLTGGGVMFTNWTKISGPGTVTFGDSHQTNSSASFSADGIYVLQLAVSDGQYTNTSEVTIALNPTLSVSLTAPADGSTYTVPTNILLQATATSTSGSVTQVLFYANSTLIGSVTNAPFSLNWKSVSSGNLALTAVAVSDDANNQSLASTPVNITVNWPTNVGQVNFASTDLQIPAAGLPIAVNREYNTQFGSSGSFGYDGKLDYEAIKIEESSSLATGWQGTKNGGLTYIIQPTTQHLITVSLSDSEKYYFAAQLVFDISDSAAINESVTPDCYNFFTVHLVCTPLGQGQLSVAAPSDTVGMDDDLSGWQRSLTAVHFDDTGFPINNYEPSLSEFTFTAPDGTKYTFNSDGTVASKTDRNSNTLSYSSSGITWSNPNIGASKQISFTRDGNNRITEVYDPIALNTSGSPVLKYDYDGNGNLTNVAQLVERSPAVYDNTGYAYTNASFIHNVTAITDPRGIVSSRYEYDSSGRLAKQFDALDRYTSYIYDTANHRQIITDRLLHTTTQTFTDSGLLASVKDAAGGVTSYGYDSQGRKTSETNAVNETTSYGYDDNGNLVATTNKLNSATSATYNNYGQPLVQIDARDNGTTNAYDDNGNLIAVTNALDIVTRYGYDSEGNRIAETNAYGLPEQTITLNGYNEYGWLTNTTIGTSSTSFTYDDNGNRKTETKYRAAGDILTQWQYDAANRVVATIDALNNTNWIFYNGIGKQSETVDALNRTNQFFYDAVGLLTNTTYADGTFATYEYDAEGHKQTVTDQDQHTTSYMYDELGQLMRTTFADTNYTSTDYDSAGHLRSSTQVAVNSAGGLTPPTTSELTTYYYYDGAGRRTAITNALNQGTTSEYDANGNQTNMVDALGRTNTYVFDKLNREKEVIYPDTATESYGYDGLNRKIAVTNQADVVTRFGYDELGRLTAVTNAFGTSQQMVTRYVYDAVGDLLQQIDALNHTNQFEYDALGRRTKETLPGLQSQTFGYDAVGNLIRQTNFNNIVITNQYDTLNQITNKSSVNGFEIAYAYSPTGQRTNMLDASGTTSYTYDLRDRLQTKDSPEGLLTYTYDGFGNLATIQSSTPSGVSLTYHYDALNRLTNVVDQLSSSTTYGYDDVGNLQTVRLPNNVTNTYQYNSLNRLTNLTATSSNGTLASFAYKLALAGNRTNLVESINGIGCTNAWKYDSLYRLTNETITASVGGSISYRYDAVGNRTNRISSVAGIASQTFAFNSNDQPTSDAFDNNGNTRTNNGNVFFYDVENRLTNAIVGGTNVVIVYDGDGNRVKEIVGSTTNLFLVDDRNPTGYAQVLEEKNISGGTTNLVRLYAYGLDLISQEDASTTVQHFYGYDGNGNTRYLTSASGTVTDSYVYDAFGDLITSSGTTANVYRYSGEQYDPNLGFYYLRARYLNPNQGRFISRDLLAGNKFDPSSLHRYAYVANNPLNLVDLSGQDFTLPSTLSGITIALGLAALDLAVIAQTSVNYRKYFGFADRDRTAAIAQNNLAITSLQRIINSGGDITFQDQHLGIGGRLGTILPGSSSFQKLANLYESTANLEGWPSALQEWAARLSTDAFNPVPIEGSIAGTPEKRVILATALLHRQQSFDAWLRRNY*