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berkeley_reactor_200306_planktonic_scaffold_253396

Search features with annotation key words

Displaying items 1-30 of 151 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_253396_1
unknown

Not on your lists

comp(1215..1961)
DNA (747bp) protein (249aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_253396_2
unknown

Not on your lists

2344..2541
DNA (198bp) protein (66aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_253396_3
Paenibacillus sp. FSL H8-237, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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2582..2875
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI000174684F
Uncharacterized protein {ECO:0000313|EMBL:ETT54335.1}; TaxID=1227350 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL H8-237.;"
plasmid related protein
berkeley_reactor_200306_planktonic_scaffold_253396_4
RHI_RIF_OD1_11_45_16, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

2896..3087
DNA (192bp) protein (64aa)
Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_11_45_16_curated
berkeley_reactor_200306_planktonic_scaffold_253396_5
unknown

Not on your lists

comp(3311..3877)
DNA (567bp) protein (189aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_253396_6
Coleofasciculus chthonoplastes, Coleofasciculus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

3941..4735
DNA (795bp) protein (265aa)
Competence protein CoiA-like family n=1 Tax=Coleofasciculus chthonoplastes PCC 7420 RepID=B4W520_9CYAN
Competence protein CoiA-like family {ECO:0000313|EMBL:EDX70713.1}; TaxID=118168 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Coleofasciculus.;" source="Coleofasciculus chthonoplastes PCC 7420.;"
competence protein CoiA-like family protein
berkeley_reactor_200306_planktonic_scaffold_253396_7
RBG_13_OD1_Falkowbacteria_36_9_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

4875..5831
DNA (957bp) protein (319aa)
Putative uncharacterized protein n=1 Tax=Chlorobium phaeobacteroides (strain BS1) RepID=B3EQA6_CHLPB
hypothetical protein
Tax=RBG_13_OD1_Falkowbacteria_36_9_curated
berkeley_reactor_200306_planktonic_scaffold_253396_8
RBG_19FT_COMBO_Deltaproteobacteria_43_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6411..7274
DNA (864bp) protein (288aa)
hypothetical protein n=1 Tax=alpha proteobacterium SCGC AAA536-G10 RepID=UPI00035E290C
lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
Tax=RBG_19FT_COMBO_Deltaproteobacteria_43_11_curated
berkeley_reactor_200306_planktonic_scaffold_253396_9
R_RIF_OD1_11_51_15, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

7283..9028
DNA (1746bp) protein (582aa)
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1J980_9ARCH id=5087463 bin=OP11_3 species=uncultured archaeon genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OP11_3 organism_group=OP11 (Microgenomates) organism_desc=Complete genome
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_11_51_15_curated
berkeley_reactor_200306_planktonic_scaffold_253396_10
R_RIF_OD1_11_51_15, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

9070..11478
DNA (2409bp) protein (803aa)
Type III restriction protein res subunit id=4047654 bin=GWB1_CP_36_13 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
type III restriction protein res subunit
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_11_51_15_curated
berkeley_reactor_200306_planktonic_scaffold_253396_11
R_RIF_OD1_11_51_15, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

11488..12996
DNA (1509bp) protein (503aa)
Type I restriction-modification system methyltransferase subunit HsdM id=4432096 bin=GWF2_Ignavibacteria_35_20 species=Methanoculleus bourgensis genus=Methanoculleus taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
N-6 DNA methylase
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_11_51_15_curated
berkeley_reactor_200306_planktonic_scaffold_253396_12
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12993..14174
DNA (1182bp) protein (394aa)
Type I restriction-modification system (Specificity subunit) n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5NWK8_AROAE
hsdS_2a; Type I restriction-modification system (specificity subunit)
Type I restriction-modification system (Specificity subunit) {ECO:0000313|EMBL:CAI10556.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
berkeley_reactor_200306_planktonic_scaffold_253396_13
Brevibacillus sp. CF112, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14186..17089
DNA (2904bp) protein (968aa)
PHP domain-containing protein n=1 Tax=Brevibacillus sp. CF112 RepID=J2R622_9BACL
PHP domain-containing protein {ECO:0000313|EMBL:EJL48017.1}; TaxID=1144311 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus sp. CF112.;"
type III restriction protein res subunit
berkeley_reactor_200306_planktonic_scaffold_253396_14
R_RIF_OD1_11_51_15, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

17102..18076
DNA (975bp) protein (325aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_11_51_15_curated
berkeley_reactor_200306_planktonic_scaffold_253396_15
unknown

Not on your lists

comp(18077..18529)
DNA (453bp) protein (151aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_253396_16
Streptomyces turgidiscabies, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18558..18809)
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=Streptomyces canus RepID=UPI00036862A0
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ELP64833.1}; TaxID=698760 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces turgidiscabies Car8.;"
berkeley_reactor_200306_planktonic_scaffold_253396_17
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(18865..19131)
DNA (267bp) protein (89aa)
Putative transcriptional regulator with C-terminal CBS domains n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6B297_9BACT
Putative transcriptional regulator with C-terminal CBS domains {ECO:0000313|EMBL:EIQ01389.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_253396_18
unknown

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19252..19509
DNA (258bp) protein (86aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_253396_19

Not on your lists

19506..20201
DNA (696bp) protein (232aa)
Marine sediment metagenome DNA, contig: S01H1_S23209 {ECO:0000313|EMBL:GAG17457.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
berkeley_reactor_200306_planktonic_scaffold_253396_20
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

20616..25991
DNA (5376bp) protein (1792aa)
YD repeat-containing protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9X9X5_9BACT
YD repeat-containing protein {ECO:0000313|EMBL:EEF63316.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
RHS repeat-associated core domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_253396_21
R_RIF_OD1_11_51_15, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(26446..27480)
DNA (1035bp) protein (345aa)
DNA primase (Fragment) n=1 Tax=mine drainage metagenome RepID=T1C8J0_9ZZZZ
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_11_51_15_curated
berkeley_reactor_200306_planktonic_scaffold_253396_22
Thiorhodococcus sp. AK35, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27481..27759)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C693_9PLAN
Plasmid related protein {ECO:0000313|EMBL:EXJ12278.1}; TaxID=1249627 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus sp. AK35.;"
plasmid-like protein
berkeley_reactor_200306_planktonic_scaffold_253396_23
unknown

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27990..28334
DNA (345bp) protein (115aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_253396_24
unknown

Not on your lists

comp(28383..29147)
DNA (765bp) protein (255aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_253396_25
R_RIF_OD1_11_51_15, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(29149..30147)
DNA (999bp) protein (333aa)
pla:Plav_0314 hypothetical protein id=13077 bin=ACD18 species=ACD18 genus=ACD18 taxon_order=ACD18 taxon_class=ACD18 phylum=OD1 tax=ACD18 organism_group=OD1 (Parcubacteria) organism_desc= OD1
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_11_51_15_curated
berkeley_reactor_200306_planktonic_scaffold_253396_26
Parcubacteria bacterium GW2011_GWC2_45_7, Parcubacteria, Bacteria

Not on your lists

comp(30149..30406)
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-N16 RepID=UPI0003B59D55
Uncharacterized protein {ECO:0000313|EMBL:KKU13933.1}; TaxID=1618932 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_45_7.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_253396_27
unknown

Not on your lists

30628..31380
DNA (753bp) protein (251aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_253396_28
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

31405..32388
DNA (984bp) protein (328aa)
Putative uncharacterized protein id=3547913 bin=GWC2_Deltaproteobacteria_42_51 species=Beggiatoa sp. PS genus=Beggiatoa taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
berkeley_reactor_200306_planktonic_scaffold_253396_29
RIFOXYC2_FULL_RIF_OD1_09_47_9_curated, RIF-OD1-9, Parcubacteria, Bacteria

Not on your lists

33256..34818
DNA (1563bp) protein (521aa)
Recombinase id=4926585 bin=GWC2_CPR2_39_35 species=Hippea maritima genus=Hippea taxon_order=Desulfurellales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_CPR2_39_35 organism_group=CPR2 organism_desc=Candidate for curation
recombinase
Tax=RIFOXYC2_FULL_RIF_OD1_09_47_9_curated
berkeley_reactor_200306_planktonic_scaffold_253396_30
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(35282..37402)
DNA (2121bp) protein (707aa)
Transglutaminase-like enzyme, predicted cysteine protease id=4327978 bin=GWA2_Methylomirabilis_73_35 species=Cylindrospermum stagnale genus=Cylindrospermum taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transglutaminase domain-containing protein
Tax=GWA2_Rokubacteria_73_35_curated
Displaying items 1-30 of 151 in total

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